Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_23423 |
Symbol | Sit1 |
ID | 7198177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011691 |
Strand | + |
Start bp | 486429 |
End bp | 488211 |
Gene Length | 1783 bp |
Protein Length | 506 aa |
Translation table | |
GC content | 52% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002184376 |
Protein GI | 219128346 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | AGGAAACTCC GAAACGTTCC TACCAAGAAC ATCTCGATCT ACTCTGCTTG AACAAAGACC CTTTCACCGA CGACACCATG GCGGACGTTG CCAACATTTT GAAGTGTGCC TACTCGGTGG GCCTGCTCAT CTTCTCTACC ATCATCATTA TGGGTCTCAT CTTCAACGAA GAAACCAAAC TCTCGTCCGA CGTTCACTCA GCCGTTGCCT TTATTGCTAT CTGGGTCGGT GTGTTGTGGC TAACCATGGT GGAGGGCGGC CAAGGGTCTT TGGTCGGTCT GGCGCCCGTT AACGGAGAGC TCTACAAGGA CTCCCATCCA ATCGCCTACA AATGCACTTC GATTGCCCAC AAGGGCGACA ACCTCGATCG GTACCTGCTG GGTCGCCAGT TCATGGTGGT GCTGACTGTC TTCACCATCA ACATCTCGGG CGGTCCCCTC AAGGACGCCG AGCTTTGGGG TTTCCCTTCT GTCCTGACCA ACATGTTTCT GGGTAGTGGT CTGGCCATGA TTCTCTTCAC GGCCATGATT GGCCAGCTGA ACTCTCAAGT CAACGCGTCA CTGTGCATGC TCGACTACAT TAACAACTAC TTCGCGCTGT TCACCTTCTG GGTCGCTATG GCGATTGAGT TTTCCGGTCT ACTTCACGCC TCCTACCTTG TGCAGATGCT TGTTGCTGCG CTTTCCGGCA AAAAGATCGA GTCCAACGAG GAGCCGCGCA ACGGACTACA GAACCTCTTC TTTTGGTCGC GCTGTCTCGT TTCTCTCGCC ATCCTGGCCT ATTGCTTTGC GGTGACTTTA GCCGCTCTCT TTGACGGCAA GACCACCATG TGGGAAGGTG TTCCGTCGGC TGTTGCTGTC ATTGTCTTCT TCCTGCTCAT GTCCGTTGTT GGCTTGCTCG AGGGTATGCA GATTGCCTTC TTTGCTGTGG CTAAGATCCC CAAGTCCGAG CGAGGAGATT CCGTGTTTGC CAAGAAGACG TGCGAACTTC TCTTCAAAGG CGAAGGAAAT AACCTTCCGG GCTTCATGAT TGGGCGACAG CTGTGTGTTG TTTCCTGCAT GTTCTTCATT GCTCGCGTCA CTAGTGTCGA GATTGCCGAA GGAGAAGAGA ACATCTTCGG AGTCTCGGAC GGCGTCCAAA AGCTCTTCGA CACGGGTCTT CTCGGGGCCA TCATCACCAC AATTGTGGCG TCCATTTCAT GGCAGCTTGT GGCCTCAGCC TTCCCTATCG CTTTCCTGTC CAACCCCTTC ACCTATATCT TCCTTCGCAT TTGTCTTCTG TTAGAAGCTA TTGGTATCTG CTCCGGAGCT TGGGTTCTTG CTGCGATTCA CAAGAAAATT GCCGGTTTCC AGCGTGACGA GGTGTACATT GGTACTGCCG AGGAACGTGC CGCCAAGAAC ATGAGTGACA ACACAGAGCA GCTACATTTG GGAGCCGGCC ATTTGGTCAA ACTTCCTGGC TTTGCTGAGC ACGCGCCACC GGCCTTGAAG GCGCTTATGG AGACCAATCC GTCCGTTGCC GTATACCTCA ACTCCATTCA TGACATGGAG ACTGGCAAAG GCAACAAAGG TCAGGAGTCC GAGACTGAGA CCGAGTAAGA AGTACACCGC ATTTGGTGGT TAGAGTCAAG AGTGGACTCA AGTCATACGA AACTCGAGTA AAGTCAGTAA ATTTTGAAAT GTGCAGCAAA CTCGACGGCT CCGCACCAGA TGGATGGATG GAGCAATCAG ATATCGTAAT CCTACAGTTA ATAAATACCC CAGTAAATCG TTCGATTCAT TTC
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Protein sequence | MADVANILKC AYSVGLLIFS TIIIMGLIFN EETKLSSDVH SAVAFIAIWV GVLWLTMVEG GQGSLVGLAP VNGELYKDSH PIAYKCTSIA HKGDNLDRYL LGRQFMVVLT VFTINISGGP LKDAELWGFP SVLTNMFLGS GLAMILFTAM IGQLNSQVNA SLCMLDYINN YFALFTFWVA MAIEFSGLLH ASYLVQMLVA ALSGKKIESN EEPRNGLQNL FFWSRCLVSL AILAYCFAVT LAALFDGKTT MWEGVPSAVA VIVFFLLMSV VGLLEGMQIA FFAVAKIPKS ERGDSVFAKK TCELLFKGEG NNLPGFMIGR QLCVVSCMFF IARVTSVEIA EGEENIFGVS DGVQKLFDTG LLGAIITTIV ASISWQLVAS AFPIAFLSNP FTYIFLRICL LLEAIGICSG AWVLAAIHKK IAGFQRDEVY IGTAEERAAK NMSDNTEQLH LGAGHLVKLP GFAEHAPPAL KALMETNPSV AVYLNSIHDM ETGKGNKGQE SETETE
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