| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_16142 |
|---|
| Symbol | |
|---|
| ID | 7198309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011691 |
|---|
| Strand | + |
|---|
| Start bp | 360155 |
|---|
| End bp | 361708 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184351 |
|---|
| Protein GI | 219128294 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000657873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGTCTCG CGGACGTGGC CATTTCTCGC GGAGCCTCGT CACTCTTGCA AAACATTGCC
TGGAGTGTGC AAACCAACGA ACGGTGGGGC ATTGTCGGTC CCAACGGAGC CGGCAAGTCC
ACTCTCCTGG GAGCCATTAC CGGGACGGTG CGGATGGACC GGGGAGCCGC CTTGGTCGGA
CCCAAAGTGC GTGTCGGACA TCTCCGACAA TCCGCCGTCA GTGGATCCGT GCGGACGCTG
GCGGAAGAAG CCCGCAGCGA AATGGTAGAG ATTGAACACG CACGGGAACG ACTCCACCTC
ACGACTCTCG TAGTGGAAGG TGGGGATTAC AGTGATCAGG CCTTGGCCGA GTTGGGGGAA
GCCCAGGAAC AATTCGAAAA GGCGGGTGGC TACGAACAGG AACAAATGGT GGATTCCGTA
CTCAAAGGAT TGGGATTTGA ACCCCAAGAC TCGCATCGCT TGTGCAGCGA CTTTTCCGGC
GGCTGGCAAA TGAGAATTGC CCTCGCCAGA CTGCTTTTGA GCAAACCCTC TCTGTTACTC
CTCGACGAAC CCTCCAATCA CTTGGATTCC TCCGCGCGAG ATTGGTTGGG CAAATACATT
GCCAAGTACG ACGGCAGCGT GGTTCTCGTT TCGCACGACG TGGAACTTTT GGACGCCTCG
GTCAATTCCA TTGCCGAAAT ATCCGGCAAT ACGCTCCTGG AATACCGCGG TTGTTCCTAC
AGCAAGTACC TCGACGAAAA AGAGTTCCGC GCCCAGTCCG CCGAAGCCGA ATACAAACGC
AATCTCGAAG AAGCCGCCCG GCTACAGTCC TTTATCGACA AATTCGGAGC GAGTGCCACC
AAGGCGGCCT CGGCACAGTC CCGCGTCAAA ATGTTGGAAA AAATGAAACG CGAAGGCAAG
CTAGATCCAC CCCCCGTGGC GGTCGTCTCC CGTGGACCAC AGCCGGAACT CGTCCTGCCC
CCGCCACCCA AACCCAACGG CGAAAACCTT CTTGCTCTCA CCAACGCCTC GATTGGGCAC
GATCCCGACC AAGAACCGCT GCTCACGAAT ATTGATCTCA CCATTACGCG AGGTATGAAA
CTGCTACTCC GGGGACCCAA CGGCGCCGGC AAGTCGACCC TCTTGAAGGC GCTGCGTGGG
AATCTACCCC ACATGCTGAT GCAAGGCACC CGTACCGAGA ACGACCGTCT GCGACTGGGG
GTCTTCACCC AAGACTTGGC GCAGGAACTC GATACCAACG CTCGCGCCGT CGACCTAGTG
ACTGCGTATG CCCGGGAAGG AGCGGACGGA AACGTTGCCG TGACGGACGA AGCAGCCAGA
AGCGTCATGG GCCGACTTAA TTTGGGTGGC GAAAAGCCAC TCCGCAAGGT AGGGGCGCTC
AGTGGAGGAG AAAAGGCACG CGTAGCGTTG AGTATGTTTG CCCTCAAGGC TAGTAATTTA
CTCATGCTGG ACGAGCCCAG TAACCATTTG GACGTGGGCT GCATTGATGC TCTGGCCAGG
GCCTTGAGTG GATGGGGAGG AAAAGACGGA GCCGTCGTGG TCATTTCTCA CGAC
|
|---|
| Protein sequence | LRLADVAISR GASSLLQNIA WSVQTNERWG IVGPNGAGKS TLLGAITGTV RMDRGAALVG
PKVRVGHLRQ SAVSGSVRTL AEEARSEMVE IEHARERLHL TTLVVEGGDY SDQALAELGE
AQEQFEKAGG YEQEQMVDSV LKGLGFEPQD SHRLCSDFSG GWQMRIALAR LLLSKPSLLL
LDEPSNHLDS SARDWLGKYI AKYDGSVVLV SHDVELLDAS VNSIAEISGN TLLEYRGCSY
SKYLDEKEFR AQSAEAEYKR NLEEAARLQS FIDKFGASAT KAASAQSRVK MLEKMKREGK
LDPPPVAVVS RGPQPELVLP PPPKPNGENL LALTNASIGH DPDQEPLLTN IDLTITRGMK
LLLRGPNGAG KSTLLKALRG NLPHMLMQGT RTENDRLRLG VFTQDLAQEL DTNARAVDLV
TAYAREGADG NVAVTDEAAR SVMGRLNLGG EKPLRKVGAL SGGEKARVAL SMFALKASNL
LMLDEPSNHL DVGCIDALAR ALSGWGGKDG AVVVISHD
|
|---|
| |