| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_55046 |
|---|
| Symbol | |
|---|
| ID | 7195817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011690 |
|---|
| Strand | + |
|---|
| Start bp | 311040 |
|---|
| End bp | 312574 |
|---|
| Gene Length | 1535 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | DNA binding protein |
|---|
| Protein accession | XP_002184109 |
|---|
| Protein GI | 219127786 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GAAGACATTT GGAGCCGTTT TGTTCTAGAG CTACGCTTGA TAGTGTAAAG TCCCGTACTC
CTCTCGGGGA ACATTCATCC CTTGCAAAAA GTTCTAGTTT TTGCATCAAG CAACAAGATT
TGAATCCGGC TGACGCTGTT TGACGTGCCT AATCGAGTGC AAAACGTGAG CGATTGCTTT
TCAACGTGGT ATCGTAGATT TCTGAGCTCC CTTGTGAAAC GAAATTCATG CTCCATCATG
ACCACAGCTG CACTTCATGC TAACAATCCT CATGCCATGA GAGTAGCTAC GAATACAGGC
CCTCGGCCAC AACTTCGTCG AGCTGTCTAC ATTCATGTTT CGGACCTCAC AAACGCCTAC
AACATCGATC ACGCTCGCCT TGAGGAAGAA CTTATTAGGG TGCAAACTAA CCGAGACAAA
CCTTCCGAGC CTAGCTCGTC TCGATTTGGT GTTCCTACAG AGCTGGATAC AAGCGCCTCA
CAAAAAAGAT TGCAGCCCCC TCGTGGAGGC TACAATCTAT GCGTGTAAGT GAATTATTCT
CCACGATTGC GGCCGTCTAC GGTGTAGCGG TTACTTATCT CATTCATTTA CTCGACTATA
GTCTGGTGGG AAAGGTCGAA GTTGTAGTAG ATAAATATCG GGTCGATGGA TCCCGGGTTC
GACTGGCTGA AGTCGAAGTA GGGGACGAAA CTGGAACGGT CTCTCTTCGA GCCAGAGACG
AGCAGATCGA TGGGCTAACG GAAGTTTCCC AGCGGGCTGG CGCCGTGGTA TTGAGAAATT
GCACCCTTGA GCTATATCAA GGAAAGCACA TTCGCCTGGC GATCACAAAA TGGGGAAAAC
TAAACAGCTT TCCGGATCAG ATCGCCAGTA CTCCGCCTCC ACCGAGCAAA ATGAATCACG
ATCGCAATTT TTCTTTGATT GACCTCAGCA TGGTTGCGAG CGAAATGGCA AGTGACCCGT
ACAGGTCGAC AGAAGCAGAT TCGCATAACT CTTCCATTCG TCAGCAGTCT TATCCTCCTG
CCCAGCCTAG ACGCGGACAA GGCAGAAAAA GTTCTACACT CAAAATGCAG ACTGGTGCGT
CGGTCGTCTC TCACCACTAT CCTACCAGTG CGAGCGCAAT CCCAATGCCT TACAGCCAAG
GTAATTTACA CGGCTATGGA TACACAGAAA GCATGGAGCC GCAACCATAC ACGTACCATA
CTCGACCTCA TGAAAGAATG ACCTCGGCTC AACAGCAGCA ATTGATGATG CAGCAACACT
ACGAAATGCA ACAACATCAG TTACAGCAGA TGTACCAGCA TGCATCCCAG GGCCGTCAGC
AAATGCTTTC ATCGCAGCCA ATAATGATTG CTCCAGGCTT GCAAGCCACC TCGAGTTTCG
ACACCGTTCC AGAGACTTCG CCGTTCCTTA CCTCTGGACA TGGTGCTGCC GCAAGTCCTA
AACAGCAATC GCAATCCAAT CCTACATTGC GCTCAGACTC TCCCCAATCT CAAGGGAAAA
TGAACCCACA AGCCGCCACC TATGATCCTC CCTAG
|
|---|
| Protein sequence | MTTAALHANN PHAMRVATNT GPRPQLRRAV YIHVSDLTNA YNIDHARLEE ELIRVQTNRD
KPSEPSSSRF GVPTELDTSA SQKRLQPPRG GYNLCVLVGK VEVVVDKYRV DGSRVRLAEV
EVGDETGTVS LRARDEQIDG LTEVSQRAGA VVLRNCTLEL YQGKHIRLAI TKWGKLNSFP
DQIASTPPPP SKMNHDRNFS LIDLSMVASE MASDPYRSTE ADSHNSSIRQ QSYPPAQPRR
GQGRKSSTLK MQTGASVVSH HYPTSASAIP MPYSQGNLHG YGYTESMEPQ PYTYHTRPHE
RMTSAQQQQL MMQQHYEMQQ HQLQQMYQHA SQGRQQMLSS QPIMIAPGLQ ATSSFDTVPE
TSPFLTSGHG AAASPKQQSQ SNPTLRSDSP QSQGKMNPQA ATYDPP
|
|---|
| |