| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49483 |
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| Symbol | RpoT |
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| ID | 7195832 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011690 |
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| Strand | + |
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| Start bp | 384999 |
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| End bp | 389478 |
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| Gene Length | 4480 bp |
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| Protein Length | 1188 aa |
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| Translation table | |
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| GC content | 48% |
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| IMG OID | |
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| Product | rpot-like RNA polymerase |
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| Protein accession | XP_002184121 |
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| Protein GI | 219127811 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.088117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTTGCAGTGT ACACTCTTCC TGGCGTAGTC GGTCGAACTG ACAGTGAGAC CCTTCGTTCT
CGACCTTACC GAAAGAAAGA TTGGCGAGAC TAGAGCGCTT GCTATCAATC GTATAGTTAG
TGTATCAATT GTCCATTTAT AGATCGGTGT GTGCCCGAGC GATACCTTGG CAAAACGCCA
AAGAACACAA AACACAGCCA ACACCGCACA CATACAGATC CTGTACAAAA CCATAACAGC
ACAAACCCCC TTTGCCGACA ACGATGCAAT CGCACTTATT CCGCCGAAGT CGCCCCTGGG
GTCGGCCCTA TCCACTCCAC TGCGGAGCAC GAGCATCTTC TGCACAACCC TGTTTCACTG
TCACAATTGC TGCACGCCTA CGATATTCCT CGGTATCCTT TGGAAACATT GGCGGTATGC
CTTCAACCCC CTGGCAATCG CGACCTCGGT ACTACCGATC TTACTCGTTG ACATTTCATA
CTGGCAACAC CAACTTCAAC AGCAACAACT ACCACCAGGC TTTGGCGGGA GTGCGCAGTT
TCCGTTCGAC GGCGGGTGCG TGGGCCCCAA CACGAACCGC CATTCAGGCG CTTTCGACGG
ACGCCCTCCA CGACGAACAA AATGACGAGG CAATGTCGGA ATCGGTTGAG GATCTGTTCC
GAGCCGAACT CGAACGATAC ACCTTTCATG CCAAGGCGCG TATGATGCCA GGGTACGAAC
ACTACAACCC AACGAAATAC GACGACATCG ACAACGATGC CTCGGTATCC GCTTCCCAGG
ATCTACAGGT AGAGTTGGAT ACGGGAAACG AATCCCTTTT TGCGAGTAAC AACGAACACG
CTCGCAAACT CGGCAGCGAA GTAACGTGGG AGGAAGAACT TGTGGATCTC GAGCAAATCG
ACTTGGACGA GGCGGTCCGT TCCCCGGAAG CGGCCAACGC ACATCAACCC AATCCACCTA
CATCGAACCA CAAAACCCAA AAATCCGCAG TGGAACTCTT GCTTGCGTTT GACCCCCAGA
ATCCGCCCAG TTGTGACGAT TTGGAGGAAC TGCAACTGTG GCTGGAATGC GAGGCTCAGC
AAGAATCGAT TACGCGGTAC CAACACGTTA TAGATTCGGC TCGCACGCGG AAGGACTACG
CCTCCCTTTC ACTGGTTCAA CGCCATGTCT TGCAATGGTA TCAACCACTC AAGCATGAAA
TTGAGTCGTT GCAAAAGGCG TATATATTCA AGGAGCAGGA TCCCGAAGGG GTCGTATTAA
CCAAGCGCGC CGCCAACGTG TACGGACCCT TTATCTGTTC GTTGCCACCG GAAAAATTGG
CTGTCATATG TGCCCACGAG GCCATCATGA GTGGGCTCTC GAATCCCGGT GTCGATGGCA
GGGATGGCAC CGCCTTTACT GCTGTGGCCA GACGGATTGG TGACGCTGTG GAGCAAGAAG
TCGTCATTCA ACGGATGCTG CATCGACGCT TCAAAGAGTC ACAAGCACGA CATTCGACGC
AAGACCCGAA TAGAATTTTG CCGAAACCGG AGGAAGAAGT TGAAGGGGAT GTTGAGCTCT
CCACGGACAA GATTGACGAG GACATGAACG ACGGCAACGC TACAACTCGG TCCAAGTCTA
GCACTGGAAC CGAAGACGTG CATAAATGGG CGTACGCCGC ATCACACCTA AAAAATTACT
TGGACGAAAT CAGTTACCGC AAACCTTCCG TCAAGAAACG ACTGGTTATC GAATACGCTA
TTCGTCGAGC CCGCACCATA TTGGAAAATG ACGAAGCATG GACCGAATCT CAGAAAATTC
AACTAGGTGC GGTACTCTTT CAAGTTTTGC TTAACAAAGC GAACGTTCGC ATCGACGGTA
AGCAAGAAAA GGCATTTACG TACGAAAAGT TTTGGATCAG TAAGCAAAAA GTCCAATCGA
TTGTCTCCAT GAATGATCGG TTGCACAAAA TGCTAGTTTC GGACAAGCTA CAATCGTTTG
GAACCACGAC CACACGGCAA AAACCTATGA TTGTGCCGCC CAAACCATGG TCTAGGCCGG
ACGAAGGTGG CTACAAGATG CTCAGAACAG AGTTGCTCCG CTATCACGGA TGCAATATGC
AAAAGGTACG CAGACTACAT CCATGTCCAT CGTGACACGC TAGAGGGCAG TCTTTCTCAT
TTTGCTTTTA ATCTACAGGA AGTCTTGCAG AATGTGGATT TAAGCATTGT TTTCGATGGT
TTAAATGCTC TTGGACGAGT ACCATGGAGA ATCAATCAAC GAGTATTGAC TGTTGCGCAA
CGCTGCTGGG ACAACAATAT ACCACTAGGT GACATTCCGT CAAAAGATGA CAACCCGTTA
CCCGAAGAAC CATTACACCC AAAACGACAG GAACAATTTT GGGAACCGGA AACACCGGGG
TACGAGTCAT ACGTCGAGGA ATATCGTCTG TACCGTGAAT CATGGAACAA GTTTAGGAGA
GTCAAACAAA GAAACATGGT ACGTGACTTA GGGAGGGAAT ATGGTGACCC TGTATATATT
ACGATCTCAT GTAAATTGCT CACAATTGTT GCTCATTGTT TTGAATCCAG GATCTACGCT
CGCTGCGATG CTCGGCGATG TTGAAACTGG ACCAAGCCGA AAAGTTTAAA GAATTTGAGG
AGATTTTCTT TCCTTACAAT ATGGATTTTC GTGGGCGGGC GTACCCCGTT CCTCCGCACT
TGTCGAACGT CGGCTCTGAT TTATGTAGAG GAGTGCTTAA ATTTGCGGAA GCCAAACCGC
TCGGGCCGCG TGGCCTCTAC TGGCTCAAGG TGCACTTGGC GAATTTTGCG GGAAAAGACA
AAATGTCGTT TGATGATCGT GTAAAGTTTG TTGACGATAA TTTGGAACAA GTACGATTAT
CTGCGGAAGA CCCGTTTGCA GGAGAACGTT GGTGGATGAG CCTTGAGGAC CCTTTTCAAG
GTCTAGCTAC CTGTTTAGAA ATAATCGATG CAATTGATTG CGGTAATCCC GAGTCGTTTT
TGTGCTCACT GCCAGTGCAC ATGGATGGCT CGTGCAACGG CCTCCAACAC TATGCTGCTC
TTGGGCGTGA CAGCGTCGGT GGCAAAGCGG TAAATCTGTG CGCGTACGAT GAACCTCAAG
ACGTATATGT CGGAGTTATG CACGAAGTAG TTCGTCGTGT CGCTGCAGAA GCCGAGCGAC
AGCTCGACTT TGATACATCT GACTTGGAGT CTCTGAGCCG AAAACAGAAG AAGGAATTGT
CTTATAACCG CGCAGCAAAA CTTGTGAACG GACTGATAGA CCGAGGAGTC GTGAAACGTA
CCGTAATGAC GAGCGTTTAC GGGGTAACCT ATATTGGAGC CCGGCAGCAA ATCCAAGAAA
AGATTATTTC AAAGGTGCGT CACGGCAGCG TAGGGTTTTC GGACGTTTCA TTTCTTCAAG
AAGCAGCCAT GAATTAACCT TTTTGTTTAC TAATAGCTGG AAGCACAGGG CCACGATGTC
GATGAAATGA GCAATGAAAT ATTTCAGGCT TGTGGTTACG TAGCAAGTCT CACCATGGAA
GTTATGGGCG ACCTTTTTAC CGGTGCTCGA GAAACCATGA ATTGGCTCAC CACTTGCGCT
AGGATGATCA CCCAGCACGG TTTTCCTTTA GCTTGGGTAT CACCTATCGG TTTACCGGCG
ATCCAGCCCT ATCGCCAGAA GAAAGCGGCT ACCATTGTTA CACTGCTGCA AACGGTTACA
CTCATTAATG AAAGCGACGA CCTGCCTATT CACAAGCAGC GACAAGTATC GGCTTTTCCA
CCAAATTTTA TTCATTCGTT GGATTCATCC CATATGCTTT TGACAGCTTT GGAAATGGAT
CGTCGTGGGT TGACTTTTTC AGCCGTACAC GACTCTTTCT GGACACACGC ATGCGACATC
GACGAAATGA ATGAAGCTCT ACGAGACGTA TTTGTTGATT TATACAGTCA GCCATTGCTG
GAGCGACTCA AGCAGACATG GGAAATGCGT TACCCTGAAC TCGAGTTCCC CGACATCCCG
AAACGCGGAG ACCTCAATCT TGCCGAGGTC AAACAGGCAA AGTACTTCTT CCAATAGAAA
ACGCAAAAGG GATATAACTT GTACAGACCA ATCAGAAGGC TAGAAAAATA CGAATGTTTC
CGTATTCAAG TGCTGCTTGA CACAACAGTG CGAGTCTTGA AACGTTGTAT TGATGAACAG
CCAACTCCAG AAATTGATGA GTTCATTGGA TCCAATCTCT CATATGCTTC AAAGTCAGAG
AAACATTCCC GGAAACCTGC TTCGTTCGGA TTTTATCCGG AAGTGTCTTG TCTATACGCT
ACTAGAGGGG TCAAACAATC TTTTGAAAGA CTGTTTACAG TTAATGTCTT CTTGAGAATA
GAGAGATGTC GGCAAGTTTC CGCTAATCCA TCTTGTAAAT TGTGGCGGAA CATTCCGAAA
CGTTGGAGAA GACATCATGA AAAAGTGCAC TATGTCGTAT
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| Protein sequence | MQSHLFRRSR PWGRPYPLHC GARASSAQPC FTVTIAARLR YSSVSFGNIG GMPSTPWQSR
PRYYRSYSLT FHTGNTNFNS NNYHQALAGV RSFRSTAGAW APTRTAIQAL STDALHDEQN
DEAMSESVED LFRAELERYT FHAKARMMPG YEHYNPTKYD DIDNDASVSA SQDLQVELDT
GNESLFASNN EHARKLGSEV TWEEELVDLE QIDLDEAVRS PEAANAHQPN PPTSNHKTQK
SAVELLLAFD PQNPPSCDDL EELQLWLECE AQQESITRYQ HVIDSARTRK DYASLSLVQR
HVLQWYQPLK HEIESLQKAY IFKEQDPEGV VLTKRAANVY GPFICSLPPE KLAVICAHEA
IMSGLSNPGV DGRDGTAFTA VARRIGDAVE QEVVIQRMLH RRFKESQARH STQDPNRILP
KPEEEVEGDV ELSTDKIDED MNDGNATTRS KSSTGTEDVH KWAYAASHLK NYLDEISYRK
PSVKKRLVIE YAIRRARTIL ENDEAWTESQ KIQLGAVLFQ VLLNKANVRI DGKQEKAFTY
EKFWISKQKV QSIVSMNDRL HKMLVSDKLQ SFGTTTTRQK PMIVPPKPWS RPDEGGYKML
RTELLRYHGC NMQKEVLQNV DLSIVFDGLN ALGRVPWRIN QRVLTVAQRC WDNNIPLGDI
PSKDDNPLPE EPLHPKRQEQ FWEPETPGYE SYVEEYRLYR ESWNKFRRVK QRNMDLRSLR
CSAMLKLDQA EKFKEFEEIF FPYNMDFRGR AYPVPPHLSN VGSDLCRGVL KFAEAKPLGP
RGLYWLKVHL ANFAGKDKMS FDDRVKFVDD NLEQVRLSAE DPFAGERWWM SLEDPFQGLA
TCLEIIDAID CGNPESFLCS LPVHMDGSCN GLQHYAALGR DSVGGKAVNL CAYDEPQDVY
VGVMHEVVRR VAAEAERQLD FDTSDLESLS RKQKKELSYN RAAKLVNGLI DRGVVKRTVM
TSVYGVTYIG ARQQIQEKII SKLEAQGHDV DEMSNEIFQA CGYVASLTME VMGDLFTGAR
ETMNWLTTCA RMITQHGFPL AWVSPIGLPA IQPYRQKKAA TIVTLLQTVT LINESDDLPI
HKQRQVSAFP PNFIHSLDSS HMLLTALEMD RRGLTFSAVH DSFWTHACDI DEMNEALRDV
FVDLYSQPLL ERLKQTWEMR YPELEFPDIP KRGDLNLAEV KQAKYFFQ
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