Gene PHATRDRAFT_40048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_40048 
Symbol 
ID7195760 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011690 
Strand+ 
Start bp23083 
End bp23856 
Gene Length774 bp 
Protein Length225 aa 
Translation table 
GC content48% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002184049 
Protein GI219127660 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00311694 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGCG CTGCATTTCT TCTCGGACTT GTATCGCTTA GCGCTGCCTT TACCCCGCAG 
CCCCGGATTT CATTGGGTGC CAGAGCCGTT TGTGGTACAA CCTTATACGC TGCCGTCGCC 
TCCGTAAAGG ATGTTACCGA CGATGCGTCG GATCGCATGG CGAAATCGGT CGATTCGGTC 
CGCTTGAACC TACAATCGGT CCGTACGGGT CGAGCCTCGG CCCAAATTTT GGATCGCGTC 
AAGGTGGATT ACTACGGCGT CGAAACGCCG CTTAACCAAA TGGCCACGAT CAGTGTTCCA 
TCTGCCCAGC AACTGTCCAT TGATCCTTAC GATAAAACTT CTTTGAACAA TATTGAGACT 
GCTATTGTGG AATCAGACTT GGGATTGACT ACAAACAACG ATGGATCCAT CATCCGCATC 
AACATTCCTT CCATGACAGA AGATCGGCGT AAGGAGATGC TAAAGCTCTG CAAGTCCATT 
GGGGAAGAAG GAAAGGTTGC GGTTCGGAAT ATTCGACGGG ATGGTCTAGA CACCATCAAA 
AAAATGGAGA AAAGCAGTGA TATTGGTACG TGCCGAATAA TGCAATTGAA CGGCCGCGCT 
CACACTGTCT CGTTTCTGAT CTAACGATTT GCTATTCGGA ATCCTCTGGT TCCATTCGTA 
GGCGAGGACG AAATGAAGGA TGGTCAAGAC ACCATGCAAA AGCTCACCGA TAAGAATGTC 
AAAGAAATTG ATGAAGTTGT CGGTGCTAAA GAGAAGGAAG TCATGAAGGT TTAG
 
Protein sequence
MKSAAFLLGL VSLSAAFTPQ PRISLGARAV CGTTLYAAVA SVKDVTDDAS DRMAKSVDSV 
RLNLQSVRTG RASAQILDRV KVDYYGVETP LNQMATISVP SAQQLSIDPY DKTSLNNIET 
AIVESDLGLT TNNDGSIIRI NIPSMTEDRR KEMLKLCKSI GEEGKVAVRN IRRDGLDTIK 
KMEKSSDIGE DEMKDGQDTM QKLTDKNVKE IDEVVGAKEK EVMKV