Gene PHATRDRAFT_55018 details

Gene Information

• Locus tag: PHATRDRAFT_55018
• Symbol: PEPCK1
• ID: 7195549
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011689
• Strand: -
• Start bp: 387907
• End bp: 390142
• Gene Length: 2236 bp
• Protein Length: 612 aa
• GC content: 49%
• Product: phosphoenolpyruvate carboxykinase
• Protein accession: XP_002183984
• Protein GI: 219127525

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAAACGTTCC CTGATCGCTT ATAAAAAGGA TTCGAAAGAT CAGATCGATC AGGTTTCATC 
CTTTGGCGTG TTTTTCTCAG CTCAATACTT CCCCCCTGCT TACGTTAGCA CACGAGTAGT 
CCTCGTTGTC AAATTATCAT GTTGTTGACT ACTGGAGCTG CCCGCGTCTT TTTGCGCTCG 
GCGGCCGTCA GCAAATCTGC CGTCAAGACG TTTGCTGCCC GTGCCGTGTT AGGCTCGGGT 
CGCTTAAGCT CGCCTTCGTC GTTGGTACGT GCCTCAGCGC TCTTCTTCTG CTCTCCATTA 
GCAATGGCTT GGTCACCGCT TGAGGATGCA TTCGTTTTTC TTTTTTTTTT CTCATGGATA 
ATGATGACCA TCTTTTGTTG CCTCACTGTT TACAGTACCA CGGATGCTCA GTCCAGACTT 
TTACTAGTCT CCCCAACGAC GCTTCCACCA GTTGCAAGGA AGGACGGGAA GCTTACAACG 
TTTCGCAGAC ACACAAGGGC ACGGACGCCT GTCTCAAAGT CGGTATTGAC AAACTCGGGA 
TCACAGGCCC TTCCACAATC TACCGCAACT TGAACTACGA CGAAATCTTT GAGCACGAAG 
TCAAGAACGG CGAAGGCGTT GTGGCCAAGG CCGAATACGG TGACACATTT TGCGTCGATA 
CCGGAAAATT CACCGGTCGT TCCCCCAAGG ACAAGTGGAT TGTATTGAAT AAGGGATCCG 
AGACCGAAGC CAACATTGAC TGGAATAGTA TCAATCAGGC AACCAAGCCG GAAGTATTCG 
ATGAGCTCTA CGACAAAGCC GTCGACTATT TTAATCAACG CGAGTCGTGC TACGTCGCGG 
ATGTCTATTG TGGAGCCAAT CCATCCACAC GCAAGAAGAT CCGCTTCTTG TTCGACAAGG 
CCTGGCAGCA GCACTTTGTA ACGAATATGT TTATTCGTCC GTCAGACGAG GCGGAGCTAG 
ATGGGTTCGA TCCTGACTTT ACCGTTATTA ATTGCTGCGC ACAGGTAGAT GACGACTGGG 
AACGCCATGG TCTCCACAGC GACACTGCTG TAGTCTTCAA CATAGAAAAG AAGACGGCCG 
TTGTTTTCGG AACCTGGTAC GGTGGAGAAA ATAAGAAGGG CATCTTTTCA CTCATGAACT 
ACTGGTTGCC TATGCAAGGA CATTTGCCCA TGCACTGTTC CGCCAATGTT GGCAAGGAAG 
GTGACGTGGC CTTGTTTTTC GGGCTCAGCG GAACTGGAAA GACCACTCTG TCAGCCGACC 
CGCACCGCGC TTTAATTGGT GACGATGAGC ATGGATGGTA CGTAGGAGGA CTGCTGTTTT 
TGAAAGCAAT GCAATCGTAG AAATGCATTC TGACGAATCT TACGTTTTCT CTATGGACAG 
GGATCACGAT GGCATCTTCA ACTTTGAAGG TGGCTGCTAC GCTAAGACAA TAAACTTGTC 
TGAAGCGACC GAGCCAGATA TTTACCGAGC CATCCACAAG GACGCTCTTC TGGAGAACGT 
GGCTATTCGG GACGATGGAA CCCCTGACTA CTCGAATGTC TCCAAGACGG AGAACGGACG 
TGTCTCGTAT CCAATTTTCA ACATTCCTGG GTATCACAAG GAGCAAATGG CTGGGCATCC 
TAGTAACATC ATCTTTTTGT CCTGTGATGC ATTTGGCGTA ATGCCTCCTG TGGCTCGTCT 
GTCTTCCGGG CAGGCCATGT ACCACTTTTT ATCTGGATAC ACAGCCAAAG TGGCCGGAAC 
GGAACGTGGA ATCACGGAAC CCTCAGCCAC ATTCTCGACT TGCTTTGGTG CTGCGTTTAT 
GACTATGCAC CCGACCGTGT ATGCTGATTT GTTGCAAGAA AAACTTGACA AACATGGATC 
CCATGCCTAT CTGGTTAATT CCGGATGGTC TGGAGGTGCC TATGGTACCG GGAAGCGTAT 
GAGTATCAAA ACGACGCGCA CATGCATTGA TGCAATTCTA GATGGATCCA TTCACGATGC 
AGAATTTCAA GTGGATCCTA TCTTTGGCTA CGAAGTACCC AAAAGCCTTC CCGGACTGGA 
CGATCTTCTC TTGGATCCCA AGTCGACTTG GGATAACCAG GACGCCTACG ACGAAACAGC 
AGCGAAACTT GCCAAGATGT ACTCCGACAA CTTCAAGCAG TATGAAGGAA AGGGGTCCAT 
TGACTACACC AAATTCGGAC CCAAGATATA ATTACGGAAC AATAAACCGG TCTATAAATG 
GGAGCCTAAT CTATGA 

 

Protein sequence

MLLTTGAARV FLRSAAVSKS AVKTFAARAV LGSGRLSSPS SLYHGCSVQT FTSLPNDAST 
SCKEGREAYN VSQTHKGTDA CLKVGIDKLG ITGPSTIYRN LNYDEIFEHE VKNGEGVVAK 
AEYGDTFCVD TGKFTGRSPK DKWIVLNKGS ETEANIDWNS INQATKPEVF DELYDKAVDY 
FNQRESCYVA DVYCGANPST RKKIRFLFDK AWQQHFVTNM FIRPSDEAEL DGFDPDFTVI 
NCCAQVDDDW ERHGLHSDTA VVFNIEKKTA VVFGTWYGGE NKKGIFSLMN YWLPMQGHLP 
MHCSANVGKE GDVALFFGLS GTGKTTLSAD PHRALIGDDE HGWDHDGIFN FEGGCYAKTI 
NLSEATEPDI YRAIHKDALL ENVAIRDDGT PDYSNVSKTE NGRVSYPIFN IPGYHKEQMA 
GHPSNIIFLS CDAFGVMPPV ARLSSGQAMY HFLSGYTAKV AGTERGITEP SATFSTCFGA 
AFMTMHPTVY ADLLQEKLDK HGSHAYLVNS GWSGGAYGTG KRMSIKTTRT CIDAILDGSI 
HDAEFQVDPI FGYEVPKSLP GLDDLLLDPK STWDNQDAYD ETAAKLAKMY SDNFKQYEGK 
GSIDYTKFGP KI