Gene PHATRDRAFT_49253 details

Gene Information

• Locus tag: PHATRDRAFT_49253
• ID: 7195548
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011689
• Strand: +
• Start bp: 380396
• End bp: 382396
• Gene Length: 2001 bp
• Protein Length: 566 aa
• GC content: 50%
• Product: predicted protein
• Protein accession: XP_002183862
• Protein GI: 219127271

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.836677
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAATATTTGA GTTGAATCAT CAACAAAAGA CTAACTGTAA AAACATCTAC ATTACCTTCC 
GAACAAATCA TGAAGATAGT GATTGTCGGA GGAGTCGCTG CCGGGGCTAG TGCCGCTGCC 
CGTGCTCGCC GTTTGGACGA ACACGCCGAG ATTCTTCTCT TGCAGTCTGG ACCGGACGTA 
TCCTTCGCAT CATGCGGCAT GCCTTACTTG ATCGGAAACG AAATAACCGA CCGCGCCTCT 
ATGGCCGTTC AAACACCGCA ATCCTTGAAC GCTCGTCTCA ATATCATTGT TCGAGTCAAT 
ACCAAGGTCA ATGAAATCAA TACAACCGAC CAGACTGTTG TCGCTCGGAA TGAAACCACC 
GGGGATATCT ACACCGAACC CTACGATGAA CTTGTTCTGG CAGTGGGTGC GGCTCCCTTC 
AAGCCTCCGA TCCCTGGTAT TGACCGTCCT GGATTGTTCA CGCTCCGCAA TCTTCAGGAA 
ATGGATGCCA TCGTTCAGTG GCTCAATGTC AAAACTGAAA CCAAGAAGCC CGCTGACATG 
CACTGTGTGG TTGCTGGGGC GGGATTTATC GGACTCGAAA TGGTAGAACA GCTACATCAT 
CGCGGCATGA ACGTGACTCT GGTCGAAATG ATGCCACAGA TCCTGGCCCC TATGGATCAG 
GAAATGGCAG CTATGCTACA CAAAGATCTC GAAGACCACG ATGTTAACGT GATTGTTGGA 
GACGCCATCA AAGAATTTGC CGCCTACGAG AAGGATGCAG ATAGCTCGGT GCTGACTTTA 
CAATCCGGAC GTGTCCTTCC TCCTGCCCAG TTGACGATTC TTGGCCTTGG TGTCCGCCCC 
GACACGGGCG TAGTCAAGGC AGCGGGCATC GAGCTTTCGC CTAGAGGCCA CATTCTCGTT 
GATGAACACT TGCACACATC CGCAGCAAAT GTTTGGGCTG CTGGTGACGC CGTTGAAATC 
ATTAACCCAA TTTTGCCGGA TGAAAAGTGG GCCGTCCCCT TAGCAGGTCC AGCGAATCGC 
CAAGGTCGCA TGATTGCCGA CAACATATAC GGCAAAAAAC GCTCTTTTCG GGGAACGTAC 
GCGGTCAGTG TAGTACGGTC CTTTGATCTA TACGCAGCCT GCGTCGGTCT TAATGAAAAG 
TTTCTCAAAG CCAAGAATGT TCCCTATAAT GTCGTGCATG TACATCCCAA CAGCCATGCC 
GGATATTATC CTGGCGCCGA AAAGATCCAT CTCAAACTGG TCTTTGACAA GGAGTCTGGA 
AAAATTTACG GCGCTCAGGC CGTAGGCAAG GACGGCGTTG AAAAACGGAT TGACGTGATT 
GGGACTGCCA TGCAGGGTAA AATGACGGTG TCGGACTTGG CCGAGTTGGA GCTCTGCTAT 
GCCCCTCCGG TTGGTTCGGC AAAAGATCCA GTCAACTTTG CCGGCATGGC GGCTCAAAAC 
ATTATGGACG GGCTCATTTC CAATGTGGAA TGGTACGAAA TGGATGATCT CGTCAAAAAT 
CCTGACGTAT TTGTTTTGGA TGTTCGTGGA GGAGCCGAAA TCGAAAAGAC TGGTAAGCTT 
GCAGAAAAGG CCGTCAATAT CCCCGTCGAT GATTTGCGTG CCCGACTCTC CGAGGTACCG 
AAGGACAAGC GTATTGTTGT GTCGTGTGCT TCAGGGCAAC GGTCGTATTA TGCTTGCCGT 
ATTTTGAAGC AAAACGGGTA TGCCAACGTG GACAATTTGG ACGGTGCCTA CTTAACCTTT 
CACGCCGCCC ATCCAGAACC GGCTGCGTAA GGTTGCTTTC TCTTACGCCA ACCCATAGGA 
TAGAATAAGT CCAAAATAAG GAAAGCCAAC AGTCTATACC TATAGCGGAC ACCATAAGTA 
AAGACTCCAA TCCGAACTCT GTGCGTTTCT GCAGAGAAGT GCATGCAATC TGTATTGCCG 
GTCCAAAGAA TCTCGGAATT GTTGCCATAA ACAGCTCAAT ACAGGTAGTT TGTATGTGAA 
AATCGAGAGA CAATGGCCAG C 

 

Protein sequence

MKIVIVGGVA AGASAAARAR RLDEHAEILL LQSGPDVSFA SCGMPYLIGN EITDRASMAV 
QTPQSLNARL NIIVRVNTKV NEINTTDQTV VARNETTGDI YTEPYDELVL AVGAAPFKPP 
IPGIDRPGLF TLRNLQEMDA IVQWLNVKTE TKKPADMHCV VAGAGFIGLE MVEQLHHRGM 
NVTLVEMMPQ ILAPMDQEMA AMLHKDLEDH DVNVIVGDAI KEFAAYEKDA DSSVLTLQSG 
RVLPPAQLTI LGLGVRPDTG VVKAAGIELS PRGHILVDEH LHTSAANVWA AGDAVEIINP 
ILPDEKWAVP LAGPANRQGR MIADNIYGKK RSFRGTYAVS VVRSFDLYAA CVGLNEKFLK 
AKNVPYNVVH VHPNSHAGYY PGAEKIHLKL VFDKESGKIY GAQAVGKDGV EKRIDVIGTA 
MQGKMTVSDL AELELCYAPP VGSAKDPVNF AGMAAQNIMD GLISNVEWYE MDDLVKNPDV 
FVLDVRGGAE IEKTGKLAEK AVNIPVDDLR ARLSEVPKDK RIVVSCASGQ RSYYACRILK 
QNGYANVDNL DGAYLTFHAA HPEPAA