Gene PHATRDRAFT_39905 details

Gene Information

• Locus tag: PHATRDRAFT_39905
• ID: 7195535
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011689
• Strand: +
• Start bp: 328181
• End bp: 332109
• Gene Length: 3929 bp
• Protein Length: 1297 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002183856
• Protein GI: 219127258

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTCGTC CGAGGAAGGT CACTCCCGCT GTTCCGGCCC CTGCCGCAGC GACGGACTCA 
CCGGCTGATG CCGCGTCCGC ATCCAAAGAG GATGAGGAGT TCGGAGGATT CGACTCCTCC 
GACGGTGAGG AGCCTTCGGG CACCGCACCG CCATCGCCAG CATCTTCGGA TGATGAAGGT 
GATGGCAAAA AGACTGCAAA GCCTTTGGCT CGCAGCAAGA ACACGTCTGA CGAAGTCAGT 
GTGATCGAGA AAAGCGTCAT CGACGCAGAG CCTCACTTGT CTAAAGACAG TGACGGTCTC 
GACTCCGTTC CTCGGCAAGA CCGTGTTGAA CGAAAGGCCT TGATGGTCGT CCTCCGTGAC 
GTCATCTGTG TTCCATTGTC AGTTGCGGCT GCAATGTTGA ACAACGGCAT TAAATCATCT 
GATGATTTCC GTCTTCTCAC GAAGGAGGAC ATCAATGATC TCTGCATGCG GCTCAAAATG 
GGCTCCATGC ATACCAAGCG AATACTCGTC TTCGCCAAAT GGATGCATCA CGCACCCAAC 
TCAGTCGATG TCGCCAAAGA GTTCACGGCT TCCGTGCTAC GCTTTGAGAT GATGACTAGA 
GCCGCGGCGT CGTATGATAA TGTGACTACG ACGGCTGCAA AGGCTGAAAA ATCGGCTACT 
AGCCTCTTGC CTGAACCGTT TGATGGTTCG CAGAAAAAGT GGCTCACTTT TCGTTACGGT 
TTCGAAGCGT GGGCAGGCGC AAGTGGGTCC ACTTTTACCG CGTGCATCGC GCACCATTCG 
GATCGGTATT CGAAAGCCGA CCCAACCGGA CCCCATACGT CGCCCCGTGA CGTTTCAGAT 
TTGTTTGCAC TCTCCCCAGT TGTCAACATC ACCAGGAACG CAACAATCTT CTATACTCTC 
ATGTCGCTAA CCAGCGCTGG GGACGCCTGG GGACTTGTTG AGCCCCACGA GCACACTAAG 
GACGGACGCA GTGCCTGGAT TTCTCTATGT GCCTTCTATG AAGGAACGAG CCAAGTGGGT 
CTCACTACCG AGCAGGCTCG CGCGACAGTT ATGGAGTCGG TGTATACAGG ACTGTCCAAA 
CAGTTTTCCT TCACCAAATA TGTCGCTCGG CATATTTCTG CCAACAATGC CCTTTTGCGT 
AACAAGGAGG GCTATTCGGA CGCTCAGAAA ACGAATTTCT TTCTTAAAGG GATTACTGAT 
CCGGCACTCC TTCCTTATAA GGCAACTGCC GAAGCGCGAC TCGATGACTG GAATTTTAAT 
CGGGTCGTCA ACTACATGCG TACGTCCGCG ACGAAACTCA GTTCCAAGGA CAGAAGCGAC 
TCACGGAACG TACGTCAGAC AAAGACCACT GGCAGAGCCA CCGGCAACCA ACGTGGTAAC 
GACAACAAAC GGCGTGGCTC GTCCAACCGT CCGTCGAACA AGGGGGCTGA GAAACCTTCC 
CGCCCTCATA AACACGTCTT ACCTCCTGAG CTGTGGGAAG CCCTAACCCC AGCTATCAGG 
GAGAGTATCT TGAGCGCAAA ACGCAGTATT GCACCCCCTG GCCGTGAGGC CAAAAGGGCT 
AAATCCTCAG ATACAGATAA CTCTAGTTCA ACCGTTGAAT CTTATTCACA ACTGCCTAGT 
AGTAAAAAAC CTATTCGTAA ACATACATGC GAAGATCACG TCCAAGTAGA TTCCAGTACC 
CCTGAAACCC TACTTCGTGA CGCACCCACA GACATTTCAC CCCACGTCAC CACCAAAAAA 
GTGACATTTG GTGCAGGTGT CCTCTTTGGT CGGTACGCTA ATCGCGTATC GTTGAATCGT 
ATGGTCCGCT CCGGCAGTCA TTTCGATCAA GCCCCTTGGC GCAAGTCGGA TTTCCGACTT 
AACGATGCGA CACTAGTTCG TATTCGTCAG AACCGCTCAC GCGGAACAAA AACTCCCACC 
AATTATGGTG AAGCGGTAAT TGACACTGGT GCAGACACCG TCTGCGTCGG TGCCGGGTAC 
TCTGTATTGT CATACACGGG TCGATCAGTC AGCCTTCGCG GTTTTCATGA TGACGGTGAA 
ACGTTTGAAC GGATTCCGGT TGTCACGGCG GCAACCGCCT ATGATTATGA CGACGGAACA 
ACCGTGATTC TCATCTTTCA TGAGGCACTG AACCTCGGGC CCACACAGAC CACCTCGCTC 
ATTAATTTGA ATCAAATCCG ACATGCCGGA CATCAAACCG ATGACATTCC AAAATTTTTG 
TCGCAAGGCA AATCCCTTCA CGGCATCGAA ACTCTCGACG GTGATTATAT CCCGTTTGAG 
CTCAAAGGTC GTGCATCCCT GTTGTATTCT CGCGTACCTA CTCAACATGA GCTTGACAAC 
TGTCAGCACA TTGATCTCAC TTGCGATCAA CCATGGGACC CCAACAGTAA AGATTGGGAA 
GAAAATGAAG CAAAGTACAC GCGACACGAT CGTTCTCGTC GTGCCTGCTA CACCGACAGC 
GTACCGGTTG ACATTCTCCC GGATTGGCCT CCACTACCCG TTTCCCCTGG ATCCGTTGTA 
CCGGATTTCC ATAACCGTGT CATGAACCCT CGCGACATCG TTCGCGAAAT CAAATACGCC 
ACTATCGGTG CGTCCATATC CAGCCCTCGG GTGTTGGACG TCGACCGCGA TAAATTACGG 
CGAATTCTCG GACATGTGCC GATGGAAGTA GTTGAGCGTA CTCTTACCGC CACTACACAA 
CTAGCGGAGC GCACGGGCGA AATGCCTTTG CATCGTCGTT ATAAAACCAA GTTTGAACAA 
CTTCGGTATC GACGTTTGAA ATGCACACTT TATAGTGATA CTTTTAAATC CTCTATAAAA 
TCCTCGCGTG GACATACCCA TACTCAGGGT TTTGTCTGTG GTGACTCTTA CTTTATCTAT 
CATTACCTAA TGAAAGCAGA GTCCGCGGCA GACCAGGGTC TCGCCGAATT CATCCACAAC 
ATCGGTATTC CTGCACAATT GCACACCGAT AACGCGAAAG TGGAAACACT TAGCAAATGG 
AAAAAATTAA CTTCCAGTCA CTGGATAAAG ACGACGGTCA CTGAACCCTA CTCTCCGTGG 
CAAAATCGTT GCGAACACGA ATTTGGTGCT GCGCGCATTC ACACGCGCCT CGTTCTCGAA 
ACCACCAAGT GTCCCGAACA ATTATGGGAC TACGCCCTTG CCTACGTCAT TTTCGTACGT 
AACCACACGG CACGAAAAGC GCTGGCCTGG ATCACGCCTA TTACTGCGAT GACTGGCGAC 
ACCCATGATA TTTCTGAAAT CCTGGTTTTC GAATTTTTCG AACCAGTTCA GTATTTTGAC 
AATCCTGATG TCAAATTTCC ACAGAATAAA GCCAAAGTCG GCCGTTGGTT AGGTATTGCC 
ACCAATGTGG GCCAAGCCTT GTGCTACCAT ATTTTGACGG ACAAGGGTAC TGTAATCACT 
CGATCTACTG TTACACCTCT CCAAAACCTC GATTCGTCTG CTCTGCAGAC TGCCCTCGCT 
ACTTTTGACG CCACCATAAG GGAGATTTAT CAGCCTTCTG ATTTCGCCCT CGGTAACAAA 
ATCAAAGCGC CGGCTTTCCG CCGTGACGAA GCGATGAAAG TCGCTCGGCG ATCCGACGAT 
CCCGGCGATG GCAACACCCG TAACAGACAC GTGTTATACG ATCTGAACGA AGGGGATGAC 
CATATTCAAC TGGATCCCGG GCTCACGGTT GACGATTTCT TCGAGAACGA CTCACCGGAT 
CAGGACCCCA CCTCCTTAAT TATTGGTACT GACGTTCTAC TCACTTCGGG TGCGGTTCAG 
CGCCAGGGCC GAGTTACCAA GCGCGATCGC GACGGTACTC CAGTCCCTAA CGACGACCCT 
GGAAATTTCG TCGTCGAATT CGACGACGGT ACCGAGGAAG TCCACGGTTA CCAAGCTCTC 
CTTGATGCTG TTTATAAGCA GGTCGATGA 

 

Protein sequence

MRRPRKVTPA VPAPAAATDS PADAASASKE DEEFGGFDSS DGEEPSGTAP PSPASSDDEG 
DGKKTAKPLA RSKNTSDEVS VIEKSVIDAE PHLSKDSDGL DSVPRQDRVE RKALMVVLRD 
VICVPLSVAA AMLNNGIKSS DDFRLLTKED INDLCMRLKM GSMHTKRILV FAKWMHHAPN 
SVDVAKEFTA SVLRFEMMTR AAASYDNVTT TAAKAEKSAT SLLPEPFDGS QKKWLTFRYG 
FEAWAGASGS TFTACIAHHS DRYSKADPTG PHTSPRDVSD LFALSPVVNI TRNATIFYTL 
MSLTSAGDAW GLVEPHEHTK DGRSAWISLC AFYEGTSQVG LTTEQARATV MESVYTGLSK 
QFSFTKYVAR HISANNALLR NKEGYSDAQK TNFFLKGITD PALLPYKATA EARLDDWNFN 
RVVNYMRTSA TKLSSKDRSD SRNVRQTKTT GRATGNQRGN DNKRRGSSNR PSNKGAEKPS 
RPHKHVLPPE LWEALTPAIR ESILSAKRSI APPGREAKRA KSSDTDNSSS TVESYSQLPS 
SKKPIRKHTC EDHVQVDSST PETLLRDAPT DISPHVTTKK VTFGAGVLFG RYANRVSLNR 
MVRSGSHFDQ APWRKSDFRL NDATLVRIRQ NRSRGTKTPT NYGEAVIDTG ADTVCVGAGY 
SVLSYTGRSV SLRGFHDDGE TFERIPVVTA ATAYDYDDGT TVILIFHEAL NLGPTQTTSL 
INLNQIRHAG HQTDDIPKFL SQGKSLHGIE TLDGDYIPFE LKGRASLLYS RVPTQHELDN 
CQHIDLTCDQ PWDPNSKDWE ENEAKYTRHD RSRRACYTDS VPVDILPDWP PLPVSPGSVV 
PDFHNRVMNP RDIVREIKYA TIGASISSPR VLDVDRDKLR RILGHVPMEV VERTLTATTQ 
LAERTGEMPL HRRYKTKFEQ LRYRRLKCTL YSDTFKSSIK SSRGHTHTQG FVCGDSYFIY 
HYLMKAESAA DQGLAEFIHN IGIPAQLHTD NAKVETLSKW KKLTSSHWIK TTVTEPYSPW 
QNRCEHEFGA ARIHTRLVLE TTKCPEQLWD YALAYVIFVR NHTARKALAW ITPITAMTGD 
THDISEILVF EFFEPVQYFD NPDVKFPQNK AKVGRWLGIA TNVGQALCYH ILTDKGTVIT 
RSTVTPLQNL DSSALQTALA TFDATIREIY QPSDFALGNK IKAPAFRRDE AMKVARRSDD 
PGDGNTRNRH VLYDLNEGDD HIQLDPGLTV DDFFENDSPD QDPTSLIIGT DVLLTSGAVQ 
RQGRVTKRDR DGTPVPNDDP GNFVVEFDDG TEEVHGR