Gene PHATRDRAFT_49047 details

Gene Information

• Locus tag: PHATRDRAFT_49047
• Symbol: TDH
• ID: 7195421
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011688
• Strand: -
• Start bp: 426512
• End bp: 428573
• Gene Length: 2062 bp
• Protein Length: 606 aa
• GC content: 53%
• Product: l-threonine ammonia-lyase
• Protein accession: XP_002183744
• Protein GI: 219127023

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.866709
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCCCTTTTCG TCCCAACAGT GCATTACAAC TATTTTGGTA TCGCAAACCT TTGCTCTGGT 
TTCGCAATCG ACGAAGAATT CTAGTGCGTC GCGTCCCATA GACTCTTATA ACGTATCCTC 
CTTTCACGCT CCCCCCGTAT GATATCCTCT AGTATTCGTC TCGTGACTCG CCAGGGAGGA 
GCAGCCCGTG GAGCCGTCAC TGGACCTCCC CGGCTCTTGG CGTGTCGCAT GATTCCCATG 
GCATCCCAGT CGACGACAGC CGAACAAGTC GAAGACGAAC CGGCGATAAA GTACGCCTTG 
AATCCCCAAG GCGAGGTCGT CAAGGATGCG GAACTGATTG ACTTTCCAGG AAGCAGCCCG 
GGCCAGAAAC CCATTCTCCT CAACGCCAAG GAACACGTGG TAGGATACCT GAGCAAGATT 
TTGAACGCAC GGGTGTACGA TGTGGCTATT GAATCCGAAC TACAACACGC CAAGAATCTC 
AGCGCGGTAC GTACGCCGTG TCGAAGTGAT CGATGATTGA TTCCTAGTCT TCTGGAAAAC 
GTTGGTCCGG AAGGCGAGAC ACTCACTGAT ATCCTTTCGT ACGAATTAGC ATTTGAAAAA 
TACCGTTCTA CTCAAACGTG AAGATACGCA ACCGGTATTT TCGTTCAAAA TTCGTGGCGC 
CTACAACAAA ATGTCGCACT TGAGTCGAGA CTTGTTGGAC AAGGGCGTGG TGTGTTGTTC 
CGCCGGCAAC CACGCCCAAG GTGTCGCGCT GTCGGCGAAA ATGTTGGGTT GTCGGGCCGT 
CATTGTCATG CCGCTGGCGA CACCAGCGAT CAAAGTCAAC GCGGTCCGGA TACACGGCGG 
GCCCAGTGTC GAAGTACGGC TTTTTGGTAA CAATTACGAC GAAGCCGCCA CGGAAGCCAA 
GCGGCTGCAG CTCGAAGACG GCATGACCTT TGTGCATCCG TTCGACGATC CACTAGTTAT 
TGCTGGACAA GGCACGATCG GTATGGAAAT TCTGAAAGAA TGCGTCTCTC GACCATTGGA 
TGCAATCTTT GTTTGCTGTG GCGGTGGTGG TATGCTGGCC GGCATTGCGG CCTACGTGAA 
ACGTGTCCGA CCAACGGTCA AGGTGATTGG CGTCGAAGCC GCCGACGCGG CTGGCATGAC 
GGCGTCGCTG CGGGAAGGCA AACTGGTGAC GTTGGACTCC GTCGGTCTCT TTGCTGACGG 
CGCGGCGGTC CGGCGTGTCG GTGACGAAAC CTTTCGTGTT TGTAAAACAC TGGTCGACGA 
CATGATCACA GTTGACACGG ACGAAATATG CAACGCCATT AAATTAACGT ACAACGATGC 
TCGCGTCGTT TTGGAGCCGG CGGGGGCCCT GGCGGTCGCT GGGATGCGCA AATACGTACA 
CACCAACGAA CTATCCGGAC AGACTCTAGT GGCTATAACC TCCGGTGCCA ACATGGATTT 
CGATCGTTTG CGCTTTGTGG CGGAACGTGC CGATGGATCC GAGCGCACAC TAGCCGTTAC 
CATCCCGGAG AAACCCGGCT CGTTCCGCCA GCTTTATAGT CTTATTTGGC CACGCAATGT 
AACGGAATTC TCCTACCGTT TTGAGACGGA CGGGGATGCA CACGTACTGA TTTCGTTCCA 
GCCCGTAATG AATATTGAAA ACGACTTTGA AGGTATTATG CACGAACTCG GCGAGAACGG 
ATTTGACTGC TTGGATTTGA GTCACAACGA ACTTGCCAAA GTGCACGTTC GACACTTAGC 
CGGCGGTCGG TCAATTGTTA ACAATGAACG AGTCTTTCGG TTTGACTTTC CAGAGTCCCC 
CGGGGCACTT CAACGCTTCC TGTTGAGTTT GGACATGGGA TGGAACGTCA GCCTTTTCCA 
TTACCGAAAC CACGGCGACG ATTTTGGACG AGTTTTGGTT GGCATTCAAG TCACCGAGTC 
AGACGACAAG AAACTGAAGT CATTCCTTGG CAATCTCGGA TATCGATACG AAGAAGAAAC 
GAACAACCCT GTCTACCGGG CTTTCTTGTG TCAAACTAAT GGAAAGGGTT TGAACGATTT 
GTCAAACAAC AGCAGCAAAT AG 

 

Protein sequence

MISSSIRLVT RQGGAARGAV TGPPRLLACR MIPMASQSTT AEQVEDEPAI KYALNPQGEV 
VKDAELIDFP GSSPGQKPIL LNAKEHVVGY LSKILNARVY DVAIESELQH AKNLSAHLKN 
TVLLKREDTQ PVFSFKIRGA YNKMSHLSRD LLDKGVVCCS AGNHAQGVAL SAKMLGCRAV 
IVMPLATPAI KVNAVRIHGG PSVEVRLFGN NYDEAATEAK RLQLEDGMTF VHPFDDPLVI 
AGQGTIGMEI LKECVSRPLD AIFVCCGGGG MLAGIAAYVK RVRPTVKVIG VEAADAAGMT 
ASLREGKLVT LDSVGLFADG AAVRRVGDET FRVCKTLVDD MITVDTDEIC NAIKLTYNDA 
RVVLEPAGAL AVAGMRKYVH TNELSGQTLV AITSGANMDF DRLRFVAERA DGSERTLAVT 
IPEKPGSFRQ LYSLIWPRNV TEFSYRFETD GDAHVLISFQ PVMNIENDFE GIMHELGENG 
FDCLDLSHNE LAKVHVRHLA GGRSIVNNER VFRFDFPESP GALQRFLLSL DMGWNVSLFH 
YRNHGDDFGR VLVGIQVTES DDKKLKSFLG NLGYRYEEET NNPVYRAFLC QTNGKGLNDL 
SNNSSK