| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49025 |
|---|
| Symbol | hCDK4 |
|---|
| ID | 7195407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011688 |
|---|
| Strand | - |
|---|
| Start bp | 338496 |
|---|
| End bp | 340510 |
|---|
| Gene Length | 2015 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183728 |
|---|
| Protein GI | 219126990 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGAT ACACCGTTGG GGAAAAGATT GGCGAAGGCT CTTTTGGGCA AGTATACTTT
GCCGTGAAGC ATTCGACCAA CGAAAAGGTG CGTGCATCGG TTCGACACGA TAATGTCGAA
AAGTGGTGCT CTCGTCTGCT TTTCTTTACA CGGAGCCACG ATCTTGAATT AATTCCACTT
TCGCTTGCGT CACTCGTACT GACAGGCCAG CTGGATGTGG ATATTCCTAC AAGTATATTG
GAACTTCTTT TGTTTGACTA CGGCGCTCTT ACCGCCTATT GCTATGTCTT TATTCTTTCT
GCTCGTTGCA GCGTGCGATC AAGCGGCTGA AAGGTGCCTT TGCGTGGGAA AAGGTTGTGC
CAATGCGAGA ATTGCAGTCC TTGATGCAGC TCACTCACCA CGCCAACATT GTTCAGCTAC
ACGAAGTACA TCTCGTCAGG GGCGTCGTTC ATTTCGTCTT TGAGTATGTG CCGAACGGCT
CCCTGCACGA TCTTATGATG CTCCGGGCGA AAGCCGAGCA GGGTCCACTT GAAGAGATTG
ACGTTCGCGC AATAGTCCAA CAAGTATTGC AAGGCTTGGA GCATTTGCAT CGTCATGGTC
TTATGCACCG AGACATCAAA CCCGAAAATC TTTTGTTGGC CGGAACAGTC GTCAAAGTCG
CCGACTTTTC GATGGCTCGT GGTGTAGAGA ATATGTCCCC CTTGACTTCG TACGTGTCGA
CCCGGTGGTA CCGGGCTCCC GAGGTCCTCC TTGCATCTCC AGATTACGAT CAAGCGGTTG
ACATCTTCGC CACGGGATGT ATCCTGGCCG AACTCCTCTC TTTGGAACCC CTCTTTCCAG
GCCGCTCGGA AATTGATCAA TTGCAACTAA TCTTTGCCCT AATGGGGCAA CCAACGTCAC
GGACGTGGAA AGAAGGCTTT CGGCTATTGC AGCGATTGGG AGTGATCGTA GACGGTGCAT
CCACTGCCAA GGCCTCTATA TCTCCTCGGC AAGGATTGGT GCAGCATCTT CCTTCGGTAT
CGGCTGCTGC TGTGGACTTC ACCTTCGCAG TCATAACTTT GAATCCGAGG GACAGGCTTA
CGGCGTCTGA AGCGTTGAGG CATCCCTTCT TAAAACCCTT ACTACGGCAA CCGATTCTCG
TCAATACGAC CACAAGCACT CCAGCAAGGA GCAAAGCATC ATCTGGGCCC ACTGCTGTCA
CAATTACCCC TTTCCAACGT CCATCGATGA CTGACGTGGA TACCCCTGAA CGCCTTACAC
ACACTGCACT CCCCGTAGGT TCCGCAAAAA GACGCAAGCC AACCGATGCT TCCGAGATGT
ACATCTCGAG TGCTTTCGAA GTCCAGTGGA GAAAATCAAC CCATACCATC GCACGGCTAC
CTGAGACCTG ACAGGACTAT TACAGCCTTT TAGTAGAATA GCCAGCAAAT AAAGTGTAGA
ATTTACATGT TTCAGTACTG CAGGATCTTT ACAGAGCAAA TATCATTTCA TCACGTTTCT
GTGTACTGAT GAAATAATTC ATGCTTTGAC AGCGCAAAAA CACTTCGAGG ACAAGATCAA
AATCGTCCAT AGACAACGCG AGTTCGTTGG ATTTACCAGT CTTGTGAAAA AGGGGCTCGA
GGACGGTCGA TTCGCGTAGC GCTTTAATGC GAAAGAACCG ATCTTCATCG AATAGCACCG
TAGGTTCATG GGCTTCTTCG TCTTCCCCAG GTTCTTCAAC CCAGTAACAA CATCCTGGTA
AACCAGCAAG GAGCTCCACT ACAAAAGTGT GACACACTTT ACATAAAGCA TCAAAGGGTG
ATTGGTCCGA CAGTTTGCTA TTTTCTGAAA GATCCATCAA TACAGCGTCG CAGGACCAAG
TTTGTGGGTC TATAGTAGTA CCGAATATTC CACCCAATGA CTGCGCCAAA AATAGTACCT
GTGATCGCAA AACTCGACTC GTGTCGGCAC TATTGGGGAT GCCACGGCCA AGTTCGCTGT
TGTGGGCAAA CGAAGGAGCA AGAATAACAC GCCCA
|
|---|
| Protein sequence | MDRYTVGEKI GEGSFGQVYF AVKHSTNEKR AIKRLKGAFA WEKVVPMREL QSLMQLTHHA
NIVQLHEVHL VRGVVHFVFE YVPNGSLHDL MMLRAKAEQG PLEEIDVRAI VQQVLQGLEH
LHRHGLMHRD IKPENLLLAG TVVKVADFSM ARGVENMSPL TSYVSTRWYR APEVLLASPD
YDQAVDIFAT GCILAELLSL EPLFPGRSEI DQLQLIFALM GQPTSRTWKE GFRLLQRLGV
IVDGASTAKA SISPRQGLVQ HLPSVSAAAV DFTFAVITLN PRDRLTASEA LRHPFLKPLL
RQPILVNTTT STPARSKASS GPTAVTITPF QRPSMTDVDT PERLTHTALP VGSAKRRKPT
DASEMYISSA FEVQWRKSTH TIARLPET
|
|---|
| |