| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48958 |
|---|
| Symbol | |
|---|
| ID | 7195372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011688 |
|---|
| Strand | - |
|---|
| Start bp | 146488 |
|---|
| End bp | 148051 |
|---|
| Gene Length | 1564 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183685 |
|---|
| Protein GI | 219126900 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.550378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GCTACTTGAT CATAAGTTGA CCCTAGTATG CAACGAGACT GATTCCTTGT CAATCTATTG
GAGTGTCCCC GACTTTGTCA GCAAATTTTA GCAGATGGTG TTGCGCTCCT CGTCCGGCAG
CGTTACCGTA CAGGTAAGTA GCTTTCTGTT GGGAGCGGCT TCGGCTTGGG CGCTGTCATG
GTTGGTACAG CAAACGCGGA AACGACCAAT TACGGATACT CGTCCTGAAG GATCCAACCG
ATCGGTCCCC TGTACCCAGA CATTAACCAC TATTAAAGAC GATAGCAACA ACAGCTATGG
TGACAAAGAC AGTGATGCTC TCAGAGAACC ACTGTCCACA TCACCAGCAG AACCTTTGAT
GGATTCCCCA GAGCTTGATT TGCGCCTGAT ACGCAAAGCC GAAGCGGTGA TCCAATGGAG
GACCTCCAGT ATCACCATTG TTGTGGAAAG ATGCACAAAC GATCACAACT ATTCCGCCAT
CTTGCGAACT GCCGAAGCCT TGGGGATTCA AAATGTCTGG ATCATTGATC CGCCTCAATT
GATGGACGGT ACCGGAGTCG GTTCAGTCGA CGACAACAAC CGAGAGGAAG GATCGAACGA
TGGTAACAGC GAAAGCAGAA AATTGCCGAC ATCCGCCCAC CCTGGTCGTC CGTTGCTTAA
GGTCTTATCG GAACAGGAAA TGGAACAGCG CGCGCAACAC CGCTTGTTTG CTCAAAACGC
TACAGAATGG ATTACCTTGC GTGAATTCAC CGACACAGCA TCGTGTCTAC ACGAACTGCG
CGCCACGGGT CACCAGATAT GGGCCACGGA CTTGTCGCAG CAGGCTGTCC CGCTGGAAAA
GGACGACTTA CAAGAAGCGG GGCATTGGCC GTTGCCGAAC CAACTGGCGA TTGTGTTTGG
GACGGAAGCC GTCGGCTGCT CGCAAGAAAT GTTGCGTCAT GCCGACTTGC GCGTCTATTT
ACCTCTACGG GGCTTTGCCG ACTCCCTGAA TTTGTCTGTT GCCACTGCTT TGGTTATTCA
GGCGTTATTC GTGTTGGACC CAGACCTGGT AGGGCGTATG CATCCTGAGG ACCGTACCGT
CTTGCGACAG GCATGGTTTT CGAAGCTAGC TCGGCAGCGG CTGCTGAGCA GTGCGGAAAA
GAAAAAGCGC AAAAAGCTCG TGGGCAACAT TGCGTACGGG GAACGCTTAC AGCTCAAAGT
CGACGCTGGG GATTGCTTGG AACGCAAGCA GATCGAAAAG CTGGCCAAGC TCGAAGCCAT
GAGGGCAGAA TTGATCGCAT TGGACGAGGC GTCGCTGTTT TCGGAGAACG CAGCCGTCGA
TGCTGCCGTG GCGGAATGGG TCCGCAATCC ACCTGCACCT CTAACGGATG TCCGACGGGC
CGACACTCAC CGTGTCACAT TTGTTGGCAA GGGTACAAAA AAGCTACACG CCGCACATTG
GAAGGACATG GTGGCCACGA ACAATACACA CTCCGTCTAT GATTCCAGTT CGAGCTTCTT
TCGGGCCCGA ATACAGCAAG CGGCGGGCAA AACAAAAACA TCGATAGCGG GGACGGAGCA
ATAA
|
|---|
| Protein sequence | MVLRSSSGSV TVQVSSFLLG AASAWALSWL VQQTRKRPIT DTRPEGSNRS VPCTQTLTTI
KDDSNNSYGD KDSDALREPL STSPAEPLMD SPELDLRLIR KAEAVIQWRT SSITIVVERC
TNDHNYSAIL RTAEALGIQN VWIIDPPQLM DGTGVGSVDD NNREEGSNDG NSESRKLPTS
AHPGRPLLKV LSEQEMEQRA QHRLFAQNAT EWITLREFTD TASCLHELRA TGHQIWATDL
SQQAVPLEKD DLQEAGHWPL PNQLAIVFGT EAVGCSQEML RHADLRVYLP LRGFADSLNL
SVATALVIQA LFVLDPDLVG RMHPEDRTVL RQAWFSKLAR QRLLSSAEKK KRKKLVGNIA
YGERLQLKVD AGDCLERKQI EKLAKLEAMR AELIALDEAS LFSENAAVDA AVAEWVRNPP
APLTDVRRAD THRVTFVGKG TKKLHAAHWK DMVATNNTHS VYDSSSSFFR ARIQQAAGKT
KTSIAGTEQ
|
|---|
| |