| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_39528 |
|---|
| Symbol | CPS-II |
|---|
| ID | 7195219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011688 |
|---|
| Strand | + |
|---|
| Start bp | 57596 |
|---|
| End bp | 62683 |
|---|
| Gene Length | 5088 bp |
|---|
| Protein Length | 1542 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183539 |
|---|
| Protein GI | 219126596 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACACG CGTTCGGTGC CAACACGACC GTTTCGGGGG AGGTCGTCTT CAACACGGGT
ATGGTCGGCT ATCCGGAAGC ATTGACGGAT CCTTCCTACC GTGGACAGAT CCTCGTCTTG
ACGTATCCCT TGATTGGCAA CTACGGGGTG CCAGATGAGA ATATCAAGGA TGCGCACGGC
TTGCCCAAGT ACTTTGAGTC TTCACAAATT CACGTTGCCG GTCTCATTGT CAGCAGTTAT
TCTTGGCAGC ATTCCCATTG GGCGGCACAA AAATCTCTCA GCAAGTGGCT GACGGACAAC
AACGTACCCG CCATGTATGG TGTCGATACT CGTGCGCTTA CCAAGCGATT GCGAGAACAC
GGGTCGATCC TGGGACGCAT GATTGTGGTA CGTTCTCTTG TGACGGCGAC GACACCGCTG
GTGAAACGTA AGTATGGAGC ACGACAGGAA TGATTCTTAC ACATTGTTGC ATCATGGCTT
TGTAGAATCC GCCCCGTATC GAAGAATCGG TTTCTTCCGA AATGTTTGAC GATCCGAATA
CACGCAATTT GGTCGCGGAG GTCTCGACCA AGAAAGTCGT TGTCTACGGC ACGGGAAACT
CGCCCAAGGT CATTGCCTAC GATTGCGGAA TGAAGTATAA CATTATTCGC TACCTCGTCG
AGATTCACAA GGTCGAGCTC GCTGTTGTTC CTTACGACTA CGATCTCGAA GCTAATCCCG
ACAACCTCGA ATGGGAAGGC CTCTTTCTTT CCAACGGTCC CGGGAACCCG ACCATGTGCG
AGCAAACCAT CAAGTCGATT CAGTACGCCT TGAATCTGGA AGTAGCCAAG CCAATCTTTG
GTATTTGTCT CGGTAATCAG CTGCTGGCAC TCGCTTCTGG CGCCAAGACC TACAAGCTCA
AGTATGGAAA CCGTGGAATG AATCAGCCTT GTATCGACTT GCGGACGGGA CGATGCTACA
TTACTCCACA GAATCACGGC TTTGCCGTCG ACGCAGCGAG TTTGTGCGAG TTTTGGAAAC
CACTCTTTCT CAACGCCAAC GATCTGACCA ACGAAGGTAT CGTACACACG AACAAGCCCT
TTTTCAGTGT CCAGTTTCAC CCGGAAGCGT GCGGCGGTCC GACCGACACT GCGTTTTTGT
TCGACAAATT CGTCGGACAC GTAAAGAATG TGCCACAGCC GTTGGTGTTG CAAGATAGTC
TCAGCTACGA GCGCAAGACG TACAAGAAAG TTTTGCTGGT TGGTAGTGGC GGTTTGAGCA
TCGGACAGGC TGGTGAATTT GATTACTCCG GAAGCCAGTG CATCAAGGCG CTCAAGGAGG
AAGGCATTGA AGTCATCCTG ATCAACCCGA ACATCGCAAC CGTTCAGACC TCACAAGAAA
AGGAAGAAAA ACAGGCTCGT GCTGCTGACC GAGTCTACTT TTTGCCCATT CAACCCAATG
TTGTCATGGA CATCATTCGC AAAGAGCGCC CTGATGGTAT CATCGTATCC ATGGGTGGAC
AGACTGCCTT GAACGTTGGA GTTCAGCTTT GGCGCTCGGG GGAACTTCAG GCTGAAGGTG
TGGAAGTTCT CGGTACGCAA ATTCCTGTCA TTGTAGCTAC AGAAGACCGC GAGATCTTCA
GTGAAAAGCT GAAGGAAATT GATGAGACTA TTGCTCTCTC GTATAGCGCT ACCAATATTG
AGGAGGCGGT CGTAGCCGCG AACAAGATTG GATACCCCGT GCTGATCCGA GCTGCCTACG
CTTTGGGAGG TCTAGGGTCT GGATTCGCGG AGAACGATGC CGAGCTCAAG ACAATGGCAG
CCAAGGCCTT TTCGACGAGC GATCAAATTT TGATTGACCA GGACTTGCGT GGTTGGAAGG
AACTAGAATA TGAAGTTGTC CGTGACAACA GTGACAACTG TATTACGGTG TGCAATATGG
AGAATTTCGA TCCTCTGGGT ATTCACACGG GAGACTCCAT TGTTGTCGCC CCATCTCAAA
CTTTGACCAA CCGGGAGTAC TTTATGCTCC GCCGTACTGC TCTGAAGGTG GTTCGCCACT
TAGGTATTGT TGGAGAATGC AACATCCAGT ACGCCTTGCA CCCTGAAAGT GAACGCTATT
GTATCATTGA GGTGAATGCT CGTCTTTCGC GATCCTCTGC CTTGGCCTCC AAGGCCACTG
GTTATCCACT TGCTTACGTC GCAACCAAGC TGTCGCTGGG AAAAAATCTT GTTTCGATTC
GAAATTCAGT GACGAAGACA ACAACGGCTT GTTTCGAGCC CAGTTTGGAC TACTGCGTCC
TGAAAATGCC TCGCTGGGAT CTGAAGAAGT TTTCCCGTGT CTCCAACAAG CTTGGTTCTT
CCATGCTTAG TGTTGGAGAA GTCATGTCGA TTGGTCGCTC CTTCGAAGAA GTGATGCAGA
AGGCGTGCCG TATGGTAAAC CCGAATCTAG ACGGTCTCGA AGGAAACTAC TCCGGGCTCG
TCGATGAAAG TTTTGACTTG GAAACGCAAC TGACTACCCC CACCGACACA CGCTTATTTG
CGGTCCAGAC AGCTCTTGAG AACGGCTGGT CCGTAGACAA AGTACACGAT TTGACAAAGA
TTGATCGTTG GTTCCTAAGC AAATTGAACA ATATTGCTAC AATGCGAAAG GCCGCAATGG
CTGCCGGTTC TCTCGACAAC TTAACGAGCA ATAATGGACG GGAGCGTATG CGTCAACTGA
AAATGGCGGG TTTCAGCGAC CGACAAATTG CTCGCTACGT TGGTCTTCCA GGTACGCTTG
ACGGTGAGTC GCGCGTCCGT GACCGTCGAA AGTATCTCGG AGTGACCCCT GTTGTCAAAC
AGATTGATAC GCTTGCTGCT GAATTCCCGG CACAGACGAA TTACCTCTAC GTAACCTACT
CGGGAGATGA GGATGACATC GAGCCATCAT CACACTCATC ACAACTCACC CCGTCTTACC
GCTATTCTCT TACGGAGAAG TCTCGCTTGG ATTCGGGCGA GTTTCGTGCC CGAGCTAGAG
CCTTTTCGGT CGGCCAGGCA GTGGCCAAGA ATACTTTGAA GGAGGCAAAA GAACGGGGCG
TCATAGTTCT GGGCTGTGGA GCCTATTGTA TCGGGTCCAG TGTTGAGTTC GATTGGTGTG
CGGTCTCGTG CATTCGACAG TTGCGCCGCG ATGGATTCAA GAGCATCATA ATCAATTACA
ATCCCGAGAC TGTAAGTACA GATTATGATG AGAGCGACCA GCTCTATTTC GAAGAGCTCA
GCACAGAGCG TGTTTTGGAT ATCTACGAAC GCGAAGGAGC TGCTGGTGTT ATCGTTTCGG
TTGGAGGACA AATTCCGAAT AACCTGGCAG ATCCGCTTTC ACAGAGTGGC GTTAACATTT
TGGGAACAGA TTCTAGCGAC ATTGGCCGTG CCGAGGATCG TCGTCAATTC TCGGACATGC
TTGACACCCT TGGAATCCAA CAGCCCGAGT GGTCTGTCCT CAAATCGAAA GACGAAGCGA
TTTTGTTTGC CGAGAAGGTT GAGTACCCAG TTCTAGTTCG TCCCAGTTTC GTGCTCTCTG
GCGCTTCGAT GAGAGTCGCC GCCGATGAGT TCCAGTTGCG CAACTTTTTG GACTTGGCTG
CGGACGTTGG TAACGACAAG CCAGTCGTCG TGACCAAATT TATCCTCGGA GCGAAGGAGA
TCGAGTTTGA TGCGGTAGCT AACAAGGGAA CAATTCTCAA CTACGCAATT GGTGAGCACT
TGGAAAATGC TGGTGTTCAC AGCGGAGATG CTACTGTTAT CCTTCCGGCC CAAAAATTAT
ACGTCAGTAC GATCCGTCAG GTCAAGCGTT ACGCCAGTGC GATTGCGAAG TCTCTTCGCA
TCACGGGACC ATTTAATATC CAGTTCATGG CTAAAGGTAA TCATGTGCAG GTCATTGAAT
GCAATCTTCG CGCGAGTCGA ACCTTTCCGT TCGTAAGCAA AACGTTGAAC AACAATTTTA
TCTCTCTCGC CACGAAGGCT ATGGTTGGAC TTGAAGCCGT TCCCTACAAG ATTTCGTTGC
TCGATATTGA CTTCATCTGC GTAAAAGCTC CCATCTTTTC ATTTACCCGC CTTCGTGGTG
CCGACCCGAC CTTGGGTGTG GAGATGGCGT CGACTGGCGA GGTTGCTTGC TTTGGAGAAG
ATTCTCATTC CGCGTTCTTG CAGTCAATGC TTTCGACAAC GTTCAAGTTA CCCAACAAGA
ATCGAACCAT TTTGCTTTCA ATCGCCAGTG AGGAATACCG ACGTGAGTTT GCTGAGGCTG
CTGTCATTTT GCACCGTCTG GGCTATAAAC TTTTCGGAAC TCCTGGTACG GCAGCGTACT
ACCAAGACAA TCACGGCATT GAGATCAAGT CTGTTTCTAA ACCGGATGCT GAAACGGACG
ATGCTCCGGG AACTGCCTTG CACGAAATCA AGAACGGAAA GATTGACTTG GTGATTAATG
TGAGTGAAGG AGCGACGCGT CGCGAAGAAA TCACGTCGGG TTACATTATC CGCCGGGCGG
TGGTGGACTT CGGGGTCAGT CTGGTAACGG ATGTTAAGTG TGCCATTAAA CTCGCGGAGT
GCTTTGACCG CGGAATGGGC GACGGTAAAT TCGTTCCACG CCACATTGGT GAGTTCTACA
AGATCCCGAC GATTGGCTGG ACGAGTACCT AAGCGGACGG GACACGGAGA ACCCTCTACA
TATATAAGAA CTTTAGGAAC CACAGTGAAT ACAGACGCCT TTGATTGGCG TTGCGTGTGT
ACCATAGACA CCATAAATAC AAACTCAAAT AATTCCTCTG TTCATTTTTG TTGTTTTCCG
TTTGTGCTGC TTGCGAGATG CAGAAAAGAT CGGAGGTAGA ACGTCGCTTT ACCAGAGACT
CTAGCTCTCG GTGGAGATTG TTTTCGGGTA TGTATCTGAG TTCTCTTCAA TTGTGTATAT
CTAATCTTGA TTTGCTGTTA CACGTCATGG TGTTTATTAC AGAGTTTAGT TTCGGCCCAA
TCTTTCACGC GGGGCCAAAT CCAAATATGT AACGTCGGTC AGTGCGCATC AAAGACAGAA
AGCTTCGGTG ACTTGCAAAG AACGAGTGCG ACCGGAAAGA CGCCATGA
|
|---|
| Protein sequence | MGHAFGANTT VSGEVVFNTG MVGYPEALTD PSYRGQILVL TYPLIGNYGV PDENIKDAHG
LPKYFESSQI HVAGLIVSSY SWQHSHWAAQ KSLSKWLTDN NVPAMYGVDT RALTKRLREH
GSILGRMIVN PPRIEESVSS EMFDDPNTRN LVAEVSTKKV VVYGTGNSPK VIAYDCGMKY
NIIRYLVEIH KVELAVVPYD YDLEANPDNL EWEGLFLSNG PGNPTMCEQT IKSIQYALNL
EVAKPIFGIC LGNQLLALAS GAKTYKLKYG NRGMNQPCID LRTGRCYITP QNHGFAVDAA
SLCEFWKPLF LNANDLTNEG IVHTNKPFFS VQFHPEACGG PTDTAFLFDK FVGHVKNVPQ
PLVLQDSLSY ERKTYKKVLL VGSGGLSIGQ AGEFDYSGSQ CIKALKEEGI EVILINPNIA
TVQTSQEKEE KQARAADRVY FLPIQPNVVM DIIRKERPDG IIVSMGGQTA LNVGVQLWRS
GELQAEGVEV LGTQIPVIVA TEDREIFSEK LKEIDETIAL SYSATNIEEA VVAANKIGYP
VLIRAAYALG GLGSGFAEND AELKTMAAKA FSTSDQILID QDLRGWKELE YEVVRDNSDN
CITVCNMENF DPLGIHTGDS IVVAPSQTLT NREYFMLRRT ALKVVRHLGI VGECNIQYAL
HPESERYCII EVNARLSRSS ALASKATGYP LAYVATKLSL GKNLVSIRNS VTKTTTACFE
PSLDYCVLKM PRWDLKKFSR VSNKLGSSML SVGEVMSIGR SFEEVMQKAC RMVNPNLDGL
EGNYSGLVDE SFDLETQLTT PTDTRLFAVQ TALENGWSVD KVHDLTKIDR WFLSKLNNIA
TMRKAAMAAG SLDNLTSNNG RERMRQLKMA GFSDRQIARY VGLPGTLDGE SRVRDRRKYL
GVTPVVKQID TLAAEFPAQT NYLYVTYSGD EDDIEPSSHS SQLTPSYRYS LTEKSRLDSG
EFRARARAFS VGQAVAKNTL KEAKERGVIV LGCGAYCIGS SVEFDWCAVS CIRQLRRDGF
KSIIINYNPE TVSTDYDESD QLYFEELSTE RVLDIYEREG AAGVIVSVGG QIPNNLADPL
SQSGVNILGT DSSDIGRAED RRQFSDMLDT LGIQQPEWSV LKSKDEAILF AEKVEYPVLV
RPSFVLSGAS MRVAADEFQL RNFLDLAADV GNDKPVVVTK FILGAKEIEF DAVANKGTIL
NYAIGEHLEN AGVHSGDATV ILPAQKLYVS TIRQVKRYAS AIAKSLRITG PFNIQFMAKG
NHVQVIECNL RASRTFPFVS KTLNNNFISL ATKAMVGLEA VPYKISLLDI DFICVKAPIF
SFTRLRGADP TLGVEMASTG EVACFGEDSH SAFLQSMLST TFKLPNKNRT ILLSIASEEY
RREFAEAAVI LHRLGYKLFG TPGTAAYYQD NHGIEIKSVS KPDAETDDAP GTALHEIKNG
KIDLVINVSE GATRREEITS GYIIRRAVVD FGVSLVTDVK CAIKLAECFD RGMGDGKFVP
RHIVSAQSFT RGQIQICNVG QCASKTESFG DLQRTSATGK TP
|
|---|
| |