| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_39509 |
|---|
| Symbol | |
|---|
| ID | 7195209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011688 |
|---|
| Strand | + |
|---|
| Start bp | 11921 |
|---|
| End bp | 13768 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183531 |
|---|
| Protein GI | 219126580 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAAC AAGGACCTTG CCCTGCTCCA GCTCCCGCCC CTATCTTATT GGTGAACGCC
GCTGCCACTC AGCCTCCTCC TACGGTATAT GTAAGCAACT CAACGGCTGT TGACAACCAA
AGCCTTGCTT TGATTCACAT CCCGCCTGCA GCTGGACCCG GTCAACTGCT TTGTTCGCCC
ATTTCAAATT CGGCTGCCCG CCAGCACTCT GCTCCGTTGA ATGGCGCAAC GTCCGACTCT
TTTTCGGTCA ATGGGACCAC CTATTGCCAC AAAGTGAACC GTGCTTCTGT CCAGTACCGT
TTCTCCACTC ACAATATTTT GTTGAATAAG GACTCTTTGA TTGATGGTGG AGCCAACAGT
GGCCTTAGCG GCTCCAATGT AACCGTTACT TCGCAATCCC TGTTGGAGGC AACTGTCTCT
GGAATTGGAA ATTTGGAACT GACCAACCTC CGTTTGTCAA CGGTGGCCGG ACTTGTTCAC
ATGATGGATT GCCCCATTAT TGGTGTGTTT CACCAGTATG CTCATCTAGG TACTGGTAAT
ACCATTCATG CGCTCCTGGG GAGTCATGGT TGACAACATC CCTCGTACTT TTGGTGGCAA
ACAGCGTATT GTCATGTCCG ATGGCCGTTT TGTCATCCTG CTTTCAATTT CTGGCGGACT
CACATATTTG TCTATGCAGG CCCCTACCGA GGAGGACCTG GACACTTTTG AATGGGTGCC
TTTTACCGCA GATAACGAAT GGGACCCAAA TGGTGTATCT TCTCCTGCCG CTACCAACGA
TGACCTCAGT TTGCAGCTTC CTGCCGGCCA TGTCCCGTTC CGTGATGAAC GCATCAATAA
CTTTGGTCCC CTTGCGCATT CCGCGGCTGT CAGTCGATCC CCTTTGAATG CCAATGCTGT
TCAACCTGAT TTTGGATGGG TTCCCAGTGC TTGTATCTCT CGCATGTTTG AGAATACCAC
GCAATTCGCT CGTGCCGATG CCCGTTTGCC CCTGCGCAAG CACTTCAAAT CGCGTTTCCC
TGCTGCCAAT GTATCTTGTT TGAACGAAAT TGTGGCAACC GATACCTTTT TCTCGGATAC
CCCTGCGGCC GATGACGGCA TTTTCAACCC TGGGGGGGGG GGGGGGCTAC AATGGCCCAA
TGTTTCGTGG GAAAAAGTTC GCAAATTACC TCTGTCTTCC CAATGAAGCG CAAATCTCAG
TTTGCCCATA CTTTCGAGGA CTTTGTTTGT ACCCATGGTG CTCCCAATGC CCTCCTCAGC
GACAATGCTT GTGCTCAGAT CGGTAAGCAG GCGCTTCAAA TTTTGCGAAT GTATGCAATC
GACAATATGC AGTGCAAGCC GCACCATCAG CACCAAAATT ACCCGGAACG CCGCATTGAA
GATGTGAAAA AGATGGTGAA CACAATCATG GATTGTACAA ACACTCCTCC GGAATATTGG
TTGCTCTGCT TATTTTATGT GACCTACTTG CTCAATCACC TTGCTGTTGA AAGCTTGAAT
TGGCGTACCC TGCTTCAGGT TGCCCATGGA CAGCGTCCTG ATATTTCTGC CTTGCTCCTT
TTCCGTTGGT TTGAACCCGT TTATTATTAC AACCCTGACC ATGCGTCTTT CCCATCGGCT
TCTCGCGAGA AAACTGGTCG TTGGGTTGGT GTTGCTGAAC ACAAAGGTGA TGCGCTGACT
TATTGGATTT TGACCGAAAA AACTCACCAA GCCATTGCTT GTTCTGTTGT TTGTTCAGGC
AATGTCAATA CTGGTTTGAA AAAGCACCGT GCTGCAAATT ACTCTCCCGA TGGAGGTGAG
CCTTCGAATC CTAAGCCTAT TGTCTTGGCT ATGAGCAGGC CTCCTTAA
|
|---|
| Protein sequence | MDQQGPCPAP APAPILLVNA AATQPPPTVY VSNSTAVDNQ SLALIHIPPA AGPGQLLCSP
ISNSAARQHS APLNGATSDS FSVNGTTYCH KVNRASVQYR FSTHNILLNK DSLIDGGANS
GLSGSNVTVT SQSLLEATVS GIGNLELTNL RLSTVAGLVH MMDCPIIGVL VIPFMRSWGV
MVDNIPRTFG GKQRIVMSDG RFVILLSISG GLTYLSMQAP TEEDLDTFEW VPFTADNEWD
PNGVSSPAAT NDDLSLQLPA GHVPFRDERI NNFGPLAHSA AVSRSPLNAN AVQPDFGWVP
SACISRMFEN TTQFARADAR LPLRKHFKSR FPAANVSCLN EIVATDTFFS DTPAADDGIF
NPGGGGGLQW PNVSWEKRKS QFAHTFEDFV CTHGAPNALL SDNACAQIGK QALQILRMYA
IDNMQCKPHH QHQNYPERRI EDVKKMVNTI MDCTNTPPEY WLLCLFYVTY LLNHLAVESL
NWRTLLQVAH GQRPDISALL LFRWFEPVYY YNPDHASFPS ASREKTGRWV GVAEHKGDAL
TYWILTEKTH QAIACSVVCS GNVNTGLKKH RAANYSPDGG EPSNPKPIVL AMSRPP
|
|---|
| |