| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48825 |
|---|
| Symbol | |
|---|
| ID | 7195126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011687 |
|---|
| Strand | - |
|---|
| Start bp | 364500 |
|---|
| End bp | 366170 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183474 |
|---|
| Protein GI | 219126458 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGACCATA GCGCGTACAG CATTCACTGT CAAGAGCAAT TCTCCAACCA GCAACTCTGA
CTTTTCTCAA CGACGAGTAT GAAAAAATCT GTAGATATTA GGGCAAAAGC TTCCTCAGCC
AATAGTGCTC TGTTTCGCGT ATTGGTGAGT TCCATAGGGT GCTTGTTGAT GACTTCCTTT
CTCATCAACG TGCTCTATCA TTCGAGATTG CCGTCTCCAC AATCCGATCT CTCCCAACTG
ATTTCTCGCG AGTCATCCTA CGTACAACAC CTTAATAAAA CGTTGTGGAG CGGCACAAAC
AAGGCCCAGC AGGTGGAAAA ACGCAACAAG AAAGGACAAA TTTTACACCA CAGTATTACG
GCGATCAAAC AAGAGGATCT ACGGGGCGTC GGCGACGACG CAACCATACC AAAGAGAGAA
TCAGATCAAG CCAATAGGGA CATGGGTCAA GCACGCCAGG GTCGCGAAGA GTTGCTGGCA
ATTCTGAAAG ATGCCGGAGT CGAAGACATT GACGTGGCGA GCGTTTTGAA ACTCCCATTG
TGGTCCGAAG TTCAGGCTTT GTACGGTGAC GGTCCGGTCG TCTATGGCCT CGATACTTGC
GAAGATTTCC GCGCGAATAT TCCTAGAGAA GATGCTTCTA TTGGCACGGC TGGACTGTTT
AATACCGGCA CCAACCCCTT CAACATGTAC CTGGAAGGTA ACTGTATCAT GCCCGAAAAC
GAACACGACC ATCACGGCGG CATGAGGTGG CAAGTTCCGT GGGGTAAGCA TATGCTGGCG
AGCCGCAAGT GGAACAACAC GGCTGGGCAC GACCATAAAG TCAATAAATC CAACGTGCTA
CCCGTTGTAC TGATTCGAGA TCCCTACTCC TGGATGCAAT CCATGTGCAA ACACCCATAC
GCCACGTCCT GGTCCAAGAA TGTGTCCCGG CACTGTCCCA ATCTTGTGCC TACCCCGGAA
GACCGAGCAG AGTTTTCCGA GTTGGGCACG AACGAGTCCA TTCCGGTGCG TATCAACTAC
CCCAATAAGC CGGCCGATTA CCCGTCGTTG GCCCATTTTT GGAGCGACTG GTATCAACAA
TATTTGCAGG CCGAGTATCC CAGGCTTTTG ATACGCTTTG AAGATTTGAT TTTTCACCAG
AAAAGTCTAC TTTCGATTGT TTGTGCATGT GCCGGAGCTA TACCCAAACA AGATACGTTT
TCGTACGTCG TCGATGCCGG TAAATGGGGT TCCGCTCACA AAGGAAGGTA AGCAGCAGCT
TCCAGCAGAT GGTGCTTTGT GATTTGATGT CGCAACACAT CCAGTAACAC AATTTTGGGT
ATTCTGTATG TACGATAATT GCTAGCTCCA ACATGATCTC CGCCATGGTG AAGTACGGAA
GCAACAAGAA ACGCTTGAGC GGTTTGACCA ATGAAGATTT GAGCTACGCC CAGGAGCATC
TGAGTGCACA CCTGATGACG CTCTTCCAGT ACGCCCAGCC ACCAGAAGGA GGGGCAGCAC
TCTCATGATA CTAGAATTTG AGCTAGTGCT TTGAACGGAA CGCTTGAAAG CTGCCTTAAA
AGCTTTGCCC TTGAACGTTT CAGAATGGAA CGAAAGCTCG CTCTTTCATA GTACAAAATA
TCTCTAAACA ATAGCTATGT ATCCAAGATT TCACCATCAA CCCAAGGTTT C
|
|---|
| Protein sequence | MKKSVDIRAK ASSANSALFR VLVSSIGCLL MTSFLINVLY HSRLPSPQSD LSQLISRESS
YVQHLNKTLW SGTNKAQQVE KRNKKGQILH HSITAIKQED LRGVGDDATI PKRESDQANR
DMGQARQGRE ELLAILKDAG VEDIDVASVL KLPLWSEVQA LYGDGPVVYG LDTCEDFRAN
IPREDASIGT AGLFNTGTNP FNMYLEGNCI MPENEHDHHG GMRWQVPWGK HMLASRKWNN
TAGHDHKVNK SNVLPVVLIR DPYSWMQSMC KHPYATSWSK NVSRHCPNLV PTPEDRAEFS
ELGTNESIPV RINYPNKPAD YPSLAHFWSD WYQQYLQAEY PRLLIRFEDL IFHQKSLLSI
VCACAGAIPK QDTFSYVVDA GKWGSAHKGS SNMISAMVKY GSNKKRLSGL TNEDLSYAQE
HLSAHLMTLF QYAQPPEGGA ALS
|
|---|
| |