| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48746 |
|---|
| Symbol | |
|---|
| ID | 7195031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011687 |
|---|
| Strand | - |
|---|
| Start bp | 131014 |
|---|
| End bp | 132918 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183427 |
|---|
| Protein GI | 219126360 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TGCTGTTGGC TCGTTTTCGA ACAAACCTTC GACCACTTTG GGGAGGCTGT TTGGCTGCCA
AAGAGATTCT CCAGACTTCA TTCATCCACC TCTTCTGTAA TCGCTGTCTT TGGTTCCTTG
TTCCTTGTAC GCACGGGGTT TGCATGTCGG CGTCGCTACG GAACGATGCG ATGCGTCGAG
CGGCGCAACT GCGAGACGAC AACGAGGACG ATAGTTTCGA TAACGAAGAC CTTGGCCCCG
CCTTCTCCGG CCAGCTACCA CGTTCGACGA ACGTGATACC ACCTTACCAG CAGTCGTTGG
CGGTGACGGA TTGTGGTAGG ATCAGGCCTC CTACTTCTCA GCAATTGCAC CACTCGACTG
CGGAGGGCAC AATGCGTGCA ATGGCACACC CCATGGCGGC GTCGGAACCC TCCATGAATT
CCACCAAGAG CAGCAATACC GCCGATCTCG CATCTACGGC TCGACAGGAA TGGCGTAAAC
ACGGGACGGG GCGTACTCAA GCCCTGGAAG ACAAGCGGTA CGCGCACGCC ACTCAGAATC
CACACCATTT CGTGGTGCGT GTGGTTTCTG CGGAAAAGCG TTCCGATTTG AGCAACGCCA
CTTTTACGAC ATACGTAATT CGGGTCATTC AGAATCAGCA GGAAATTTTA GTGGAGCACC
GGTATTCGGA TTTTGCCAAA CTGCACGCAT TGTGTCAAAC TCACAACGTG GCGACGCCGG
GGGACGCGTG CTTCCCGGCC AAGCATTGGG CCGGTCGAAT AGGGAACTGG ACACCTTCCA
TTACGTGGGC ACCAGATAAG CACGACGATC TGGTTTCCTT TCGAACAATT CAACTTGATA
TTTGGCTCGT GCATCTTTTA GAACAGTACA ACGCCGAAAC GTTACCACCC ATTTTAGCGC
AGGCGGTCTT TGAATTTCTG GCTGCCCCCG ACAAGCTGCC CTGCGAACGC GAGAATGACA
CGTCAGCTTC AGGAGATCGT TGGAAATGGA ATAATCCCGT GTCCTTCACA CTAGGTTCAT
CCATTCGGCA AGCCACACGG ACGGTGCAAT ACATGTGTCA CGGAAACATG TCGGAAACGG
ACCAAGCTAT CCCTTTGGAT TTGTTGCAAC AAGCGAAGGG GCTAGTGTTC ATGACAGTTT
TTAAGGCGGG CTTTGTGGTG TCAGGCCGAT TAGGGACAGG CTTGGTCATT GCACGATTAG
AAGACTCGTT TTCGGGCGAA GGAGGCCCCG CATGGAGTGC ACCAGCAGCC GTTGGTACAG
TCGGGATGGG TTGGGGCGCC TTGGTTGGTG GGGATGTGAC GCATTATCTT ATTGTTCTGA
CAACTACCAA AGCAGTCAAA GATATTTGTG GGTCCAATTC GATCCAATTG GGAGCCGAGT
TGGGAGTTGC TGTCGGTCCT GTTGGAAGGG GTGCAACCTC GCACCTACAA ACGGGCGATT
GGACCTTACA TCCGGCTTAC GCCTACGCCC ACTCCCAAGG ATTGTTTGTC GGTCTGAGTC
TAGAAGGTTC CGTTGTTCGA ATTCGAAACG ACGTGAATTC CAAATTTTAC GGCCAACCGG
TCGATGCTGG GCTCGTAATG CAGCAGAAGG GCCCAAAGGC GGCCGAGCCC CTATACCAAG
CCTTGGAGGA AGCGACTCAA ATTCCTGTAC GGGACGGCGC CTTTCGCCCC AGTGATTATT
TTTCTCCACC TCCCAAAGGA GCCCCTACGC CCAGGACCAG CAACACTTCG AGAACACCAT
TCCGGCCGCC TATTGATGGG AGGTACAACA ATTTATGCTC CACATCGACA CCCACGAGTA
CATCGTTTTG TTGAGAAGAA TGTTATTTTA GGTCGATGCC GAATTACGCG CGCGAAAAAT
AAATTGTAAA TGGTAGCTAT GTAGAAGACT TTACGGAAAA GAGTG
|
|---|
| Protein sequence | MSASLRNDAM RRAAQLRDDN EDDSFDNEDL GPAFSGQLPR STNVIPPYQQ SLAVTDCGRI
RPPTSQQLHH STAEGTMRAM AHPMAASEPS MNSTKSSNTA DLASTARQEW RKHGTGRTQA
LEDKRYAHAT QNPHHFVVRV VSAEKRSDLS NATFTTYVIR VIQNQQEILV EHRYSDFAKL
HALCQTHNVA TPGDACFPAK HWAGRIGNWT PSITWAPDKH DDLVSFRTIQ LDIWLVHLLE
QYNAETLPPI LAQAVFEFLA APDKLPCERE NDTSASGDRW KWNNPVSFTL GSSIRQATRT
VQYMCHGNMS ETDQAIPLDL LQQAKGLVFM TVFKAGFVVS GRLGTGLVIA RLEDSFSGEG
GPAWSAPAAV GTVGMGWGAL VGGDVTHYLI VLTTTKAVKD ICGSNSIQLG AELGVAVGPV
GRGATSHLQT GDWTLHPAYA YAHSQGLFVG LSLEGSVVRI RNDVNSKFYG QPVDAGLVMQ
QKGPKAAEPL YQALEEATQI PVRDGAFRPS DYFSPPPKGA PTPRTSNTSR TPFRPPIDGR
YNNLCSTSTP TSTSFC
|
|---|
| |