Gene PHATRDRAFT_39506 details

Gene Information

• Locus tag: PHATRDRAFT_39506
• ID: 7195182
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011687
• Strand: -
• Start bp: 679653
• End bp: 683037
• Gene Length: 3385 bp
• Protein Length: 1121 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002183530
• Protein GI: 219126575

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTACCGG CCACCAGGCA AATGACTAGC GGAGCTGCTT ACTCGCATTT TTTGGATAAT 
GTATTTTCAC TTCCTCAAGG GCACCCAATC CGACTTAGTT TCGAACAACA AGGGTATAAT 
TCTGTTGATG ATCTCCTCAG TATTTTTGAG AACGAACTAG ATGCCCTTGG ATATGTGCCT 
CCAGCGAGTC CTGACACCAA TGAAGACCCT CAGTGGACCC CATTGCTCAT GGCGCACCGA 
CAGATCCTTC GACATTTCCT GCGTTGGCAG GCATCACTTG AACGGCAAAA GGGAAGTCCT 
TTGGAAAATT CGGAGCTTGT TGCATTGACT AGTGGAGATT TCATTTTATA TCGACGCTCG 
GCACTCGGAC AAGTCTCTAA TGTTCCGGCC ACTATCAGTC CTTCTCTGAA CAACCAGTTA 
AGTACGTCCA CGAAAGCTCG ATCGGCAGTC GACGAATTCA AGCGAGGAGT CAAGCGTGAC 
AAGACACACT ATCCTATCCT TAAGGATGAC CGATACTGGG ACAATTTCTA CCGGTCTTTC 
GTGGTCACCG CGGTATCCCA TAACGTCGAA AAGGTACTTG ACCCATCCTA TGCACCAACG 
GACCCCTCAG AGAAGTCTCT CTTTGAGGAA CAGAAGAAAT TTGTGTACTC TGCTTTGGAA 
CATACACTTC AGACAGATAT GGGGAAAAAC CTTGTTCGCG AACATAGTTT TGACTTCAAT 
GCCCAAGAAG TTTTCCGTAA GGTTGTCAAG CACTACACAG AGTCTGCCAG TGCCAAGATT 
GGGTCCTCCA ACACTTTGGC CTACCTCACT ACGGCAAAAT ATGGCACATC CTGGACAGGA 
ACGGCGGAAG GGTTCATCCT TCACTGGAAG AACCATCTTC GTATCTACAA TGATATGGTC 
CCTATGGCAG AGCAGTTGCC TAAACAGCTT TGCCTCAGTT TGCTTGAAAA CGCTGTACAC 
GACATCCCTG AACTCCGTCA GGTCAAGATC ACCGCTACTT TAGACTTAGC TAAAGGAGGC 
ACTCCCCTCA ACTACGAAGG TTACCTGAGT CTATTGCTTG CATCTGCTTC TCTATACGAT 
AAAGGGAACA ACCTTTCCAA TTCTCGTAAT GTCAAGAGCA AGCGTAGCGC CTTTCTGACC 
GACCTCTCGT ATGATCAACC TGACTTCACC GAAGACAATG GAATTGACTA TGATATCGAT 
CTCTCTCCTG CAGTGATCTA TGAGGCCAAT GCTCACAACC GCAAAGTCAG TCCATCTGGC 
CACCGTAATC GCGATCCGGC AACCAATCGA GAGCGTCCGT ATATCCCTCG CGAGATGTGG 
AATCAGCTTT CAGATGATGC CAAAGCCATT CTCCAAGGCC TGTCCGCACC CGACAAAGGC 
CCTACTCGAT CCGGCGATGT CTCGCAACGT GCGTTGGAAG CGAATACCCA CGCCAAGATA 
TCGAACGATA ATGGCGAGTT CAACCGTAGC GAACCAGACA ACCAGCAAGC TGAAGCATTC 
CATGACTGTG ATCAAACGAC GGAGCTCCTT GCACACTTGA CTGACCGTGT GAGTCACATG 
GGAGACGGCG ATATCCGAAA AGTTCTTGCT GCATCCCGCC GTACACCAAT CAATTGTACC 
CAGTCATCGG ACAATCGACA ACAGTCTGTT CAACTCAACG TTCTGGAATA TCAAGTCTCT 
CGTCATTCCG TTGAGAACAA AACTGCTGCT CTAGTCGATC GAGGTGCCAA CGGTGGACTT 
GCTGGCTGTG ATGTCAAAGT TGTGAACAAG ACAGGACGGT CTGCTAGTAT AACGGGTATC 
AACGAGCATA CCCTGTCAGA TTTGGATATT GTCACTGCCG CTGGGTTTGT TGAGTCTCAC 
AAAGGCCCTA TCATTGTGAT TATGCACCAA TACGCCTATC TTGGCAAGGG AAAGACCATC 
CACTCCAGTG CCCAACTTGA GCATTACCGA AACACAGTCG AAGACCGGTC CCGCAATGTT 
GGAGGACAAC AGCGGATTGT TACCTTGGAT GATTATATCA TTCCTCTTCA TATTCGACAA 
GGCCTCCCAT ATATGGATAT GCGGCAGCCT ACCGATAGCG AGTTCGAATC TCTTCCGCAT 
GTTGTGTTGA CTTCCGATAT TGACTGGGAC CCTTCTATTC TAGACAATGA AGTTGACATG 
GTGAACGACT GGTACGATGC AATGCAAGAT CTTCCGGGCA ATGCCTATGT TGAACCACGA 
TTTGACAACA CAGGTCAATA CCTCCACCGC CATATTGCGT ACTACGATCT CGATCGCGAG 
GACGCTATTG ATTGCATCAT CCAGTGCCAT AAGCACAATG TCAAACGCAA TGAACGGGAT 
TATGAAGCAT TACGTCCCTG CTTGGGATGG GTATCCGGTG ACACTGTCCG AAAAACCATC 
ATGGCTACGA CACAGTACGC TCGCGAAGTC TACAATGCGC CGCTACGAAA GCACTTCAAA 
TCGCGATTCC CGGCTCTAAA TGTGCATCGG CGCAACGAGG CTGTTGCAAC GGATACTATC 
TGGTCAGACA CACCTGCTGT TGACAACGGA GCCAAGTTTG CACAACTGTT TGTGGGGAGA 
CGTTCCTTAG TCACCGATAT TTATCCCATG AAAACAGACA AGGAGTTTGT CAATGCCCTT 
GAGGACAATA TTCGCCATCG TGGAGCTATG GATAAACTTC TGAGTGATCG AGCCCAAGTC 
GAAATCAGTA AGAAGGTTGC TGATATTACA CGAGCCTACA ACATTGACCA ATGGCAAAGT 
GAACCTCATC ATCAACATCA AAATTTTGCC GAACGCCGTA TTGCTACTAT TGAAGCTAAT 
ACCAATAACG TTCTTAACAA AACCGGTGCT CCTGATTCCA CTTGGCTCTT GTGCATTGCC 
TACATCTGCT ATGTCTTCAA CCATTTGTCC CATGAATCTT TGCATGATCG TACACCGCTC 
GAGACTCTTC TTGGTAGCAC CCCTGATATC AGCGTACTTC TCCAGTTTCA TTTTTGGGAA 
CCGGTGTACT ACCGGATCGA AGATCCATCT TTCCCTTCCG ATGGTACCGA AAAGAGCGGT 
CGCTTTGTTG GCATTGCTGA ATCTGTTGGG GATGCTCTCA CTTACAAAAT CCTCACAGAC 
GACACCAACA AGATCTTATA CCGCTCTAGT GTGCGTTCCG CATTGAAATC CGGAGAAACC 
AACCTACGCC TTACGCCACA GGATGGGGAG AGTAATTCTA AGCCTATCAA CTTTGTCAAG 
TCGCGTAGAA CTGAAAACAA AAATTCCTAT GCCTTAAAGG ATCTACCCGG TTTCACCCCT 
GAGGACCTTA TTGGACGCAC GTTCCTAACC GATACTCAGG ATGATGGGGA GCGTTTTCGT 
GCACGTATCA CAAGGAAAAT CTTAG 

 

Protein sequence

MVPATRQMTS GAAYSHFLDN VFSLPQGHPI RLSFEQQGYN SVDDLLSIFE NELDALGYVP 
PASPDTNEDP QWTPLLMAHR QILRHFLRWQ ASLERQKGSP LENSELVALT SGDFILYRRS 
ALGQVSNVPA TISPSLNNQL STSTKARSAV DEFKRGVKRD KTHYPILKDD RYWDNFYRSF 
VVTAVSHNVE KVLDPSYAPT DPSEKSLFEE QKKFVYSALE HTLQTDMGKN LVREHSFDFN 
AQEVFRKVVK HYTESASAKI GSSNTLAYLT TAKYGTSWTG TAEGFILHWK NHLRIYNDMV 
PMAEQLPKQL CLSLLENAVH DIPELRQVKI TATLDLAKGG TPLNYEGYLS LLLASASLYD 
KGNNLSNSRN VKSKRSAFLT DLSYDQPDFT EDNGIDYDID LSPAVIYEAN AHNRKVSPSG 
HRNRDPATNR ERPYIPREMW NQLSDDAKAI LQGLSAPDKG PTRSGDVSQR ALEANTHAKI 
SNDNGEFNRS EPDNQQAEAF HDCDQTTELL AHLTDRVSHM GDGDIRKVLA ASRRTPINCT 
QSSDNRQQSV QLNVLEYQVS RHSVENKTAA LVDRGANGGL AGCDVKVVNK TGRSASITGI 
NEHTLSDLDI VTAAGFVESH KGPIIVIMHQ YAYLGKGKTI HSSAQLEHYR NTVEDRSRNV 
GGQQRIVTLD DYIIPLHIRQ GLPYMDMRQP TDSEFESLPH VVLTSDIDWD PSILDNEVDM 
VNDWYDAMQD LPGNAYVEPR FDNTGQYLHR HIAYYDLDRE DAIDCIIQCH KHNVKRNERD 
YEALRPCLGW VSGDTVRKTI MATTQYAREV YNAPLRKHFK SRFPALNVHR RNEAVATDTI 
WSDTPAVDNG AKFAQLFVGR RSLVTDIYPM KTDKEFVNAL EDNIRHRGAM DKLLSDRAQV 
EISKKVADIT RAYNIDQWQS EPHHQHQNFA ERRIATIEAN TNNVLNKTGA PDSTWLLCIA 
YICYVFNHLS HESLHDRTPL ETLLGSTPDI SVLLQFHFWE PVYYRIEDPS FPSDGTEKSG 
RFVGIAESVG DALTYKILTD DTNKILYRSS VRSALKSGET NLRLTPQDGE SNSKPINFVK 
SRRTENKNSY ALKDLPGFTP EDLIGRTMMG SVFVHVSQGK S