Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_22713 |
Symbol | Rab1a |
ID | 7195044 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011687 |
Strand | + |
Start bp | 194487 |
End bp | 195933 |
Gene Length | 1447 bp |
Protein Length | 203 aa |
Translation table | |
GC content | 50% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002183313 |
Protein GI | 219126122 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.517638 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TACTAGTAGT AGTAGAGTAG TAGTAAATAC TCCACGGTCA CTTCTTTCCA TTCACAGTCA ACGGTCTTGT TCCAAAATCG ACCATGAATC CCGAATAGTA AGTACCTTCT CTTGCGATCG TTTTTCCCTC TGTGGTATGG GAATGTTCTC CATGAGCAGA CATTCTTCTC GTCAAGGCAG ACGAGGACGC AAACGGACAA GGCTTCGCCA CGAACCAGAC CGGAGTTCCG CATCTAAGAA TTTAGCTTAT AACGGCCAAA AGCGTGGGAC CGCCCAGCGC GTCGTTCCTC TCGCCGCTTT GGAGTCTCTC GTCCCGTTTC TCTCTTGATG TATACATTAC CGTAAACGAC AATGTACTCT TGTGGAAACA CCAATATCCA TAATCTCCAC GGGACCTGAC CGTACCGTGG AGACGGTCAT TGGGGGAAAG CGCCGGGCTA TTCAAGCCGG GCGGACGAGA CGTCGCGAGA CGGACCAAAG ATCCTTGTTT TGTTGTTCGC GGCGTGTCTC TGACTCTCTT TTATGTTGTT AATTCGCGGC ACTGCAGCGA TTACCTTTTT AAACTGCTCC TTATTGGAGA CTCCGGTGTC GGAAAGTCCT GTTTGTTGCT TCGATTTGCC GACGACACGT ACACGGAATC GTACATTTCG ACCATTGGAG TCGATTTTGT AAGTTTTGGC ATCCCCAACG ATACGACTGA CTGCTTCCGG ATGCCATCCG TCGGCGTGTC GAAAGCAAGG AAACACACAC ACACACTCAC GTACGTTGTG CTCTTTCTTT TTTCTTTGGA TTGTAGAAAA TCCGCACCAT TGAGCAGGAC CAAAAGACGA TCAAGTTGCA GATTTGGGAT ACGGCTGGAC AAGAACGCTT CCGGACCATC ACCTCCAGTT ACTACCGCGG AGCTCACGGC ATTATTGTCG TTTACGACGT GACGGACGCC GAATCCTTCA ACAATGTCAA GCAGTGGTTA CACGAAATTG ACCGATACGC CGCGGAGAAC GTCAACAAAT TGTTGGTCGG TAACAAGTCC GACTTGACCG CCAAGCGTGT CGTATCCACC GAGCAGGGCA AGGAATTCGC CGATTCGTTG GGCATTGAAT TTTTGGAGAC TTCCGCCAAG ACCTCTTCGA ATGTTGAACA GGCATTTTTG ACCATGGCTT CTCAGATCAA GGCCCGAATG AAGACGCAGC CTTCGGCCGC CGGTGCACAA GCTGGCAAAG GAGGAGTCTC GCTGCGCTCG CAACAGGTCA AGAACAAGGA AGGATGCTGC TAAACTAGGT GTATGTTTAG AGCAGAGTAG AAGGCGACCG CCGTCTACAG AATGCCAGGA CGGTTTCCAT TTTTGAATGG TTGGGCCTGG TCTGGAGAGA AAAATAAATT TGTCGTAGCA GATTGGCATC GTTTGAACGA TGGTAACCGA AAGTATGGAA CCCTTTTTAT TATTGTG
|
Protein sequence | MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DTYTESYIST IGVDFKIRTI EQDQKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDAESFNNVK QWLHEIDRYA AENVNKLLVG NKSDLTAKRV VSTEQGKEFA DSLGIEFLET SAKTSSNVEQ AFLTMASQIK ARMKTQPSAA GAQAGKGGVS LRSQQVKNKE GCC
|
| |