| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48698 |
|---|
| Symbol | |
|---|
| ID | 7194683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011686 |
|---|
| Strand | + |
|---|
| Start bp | 665132 |
|---|
| End bp | 666872 |
|---|
| Gene Length | 1741 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183135 |
|---|
| Protein GI | 219125747 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTCCC AAAAGGGACT CAGTGAGTCC GGAGTAGGAA TTCCCAATTG GAGTCCGCCG
GCGTGTATCG AGAGTATCAC AAAGAAATCC TCCAACAAAT TGGCAATAGC TGACCATGGC
CGTTGCCGGA AGATGACTAT GGGACCTCGT CGCCCTGTAC AAGGTAGCGA ACTATCGTAC
CAGCCCGTGT CGATCGACGG CGAAGCAGAA TGGGAGGGCA GTTGCGATTT ACAAGGCTTT
TCTGGAACCA GTCATGCAAG ACAGTCTCTG CCCTCCTCAA CAAGTTCGAG TCTCTCGCCG
TGTTGCGACT CCGGTACAAT TATGGCTTTT GGTGCCTTGG GCGTCTTGAA CAATATGCCT
TACGTCATCA TGCTAGCCGC AGCGAAGTCG ATTTCGGAAG GAGGGACCGC TTTGGTCTAT
TTGGCGAACG TCGTACCCGG ATTGATAGTC AAGATTTCGG CACCATATTG GTTCGACAGA
GTCTCCTACC GCCGGCGTCT GTGGACTGCG TCCCTATTAA TGGGTACCGC ATTTGTTTTG
GTGGGTCTCT GTTCTCGGGA GTCGATCGAC GAATCATCAT CGCAGACTGT TTCGTCGCGT
ACTTATGGGC AGCTTTTGGG AGTGGCCTTG ATGAGTGTAC AGTGTGGATT GGGAGAAGCA
TCCCTATTGG CGTTGGCTGG CGGGATGGAC GCGGCGGCTT TGACGGCCTT TTCGTCAGGT
ACCGGTGTAG CGGGCCCCGC TGGGTACTTG TGGAAAATTG TGCTCACGAG CAGCCTCGGA
TGGTCCCTCC GGCGGATCGC GTATACGGCA ATCCTCCTGC CTATCCTTTA CGCTGGAATC
TACCAACGTT GTATTGAACC AATCCTTCGG GGAGACGCTG GGGACGTAGT TCCTGAGTAC
GACACCTCCC AATTGGAAGG ACCGAGTATT CGCGATCGAC GTCCGGAAAC GGATGTCCCG
CTTGTTCCTG GAGAGACGAC GGGATTGGGG GAAGAGCTAC AAGTCGTTGA CCGCAGTCGT
AGCACTTGCG ATAACGACAC ATCTCGCGAA GATTGCACCA ACGGGAGCGA TGCGTCGCAA
GACCCACTTT TCACGGTTCC GATTGCGTCC ATGACTGGGA CGCAAAGATT TCACCGAGTA
TTGTCACTGT GGAGGTACAT TGTTCCTCTC TTTACAGTGT ACGCTGCAGA ATACGTTTGC
CAAGCAGGGG TGTGGACCGC TCTCGGATTT CCCGTATCAA ACGCGGCCTC CCGGAATCAC
GCTTATCAAA CCGCCAACGC GTGCTATCAA ACGGGGGTAC TGGTAAGTCG TAGTAGCGGC
AACTGTTTCC GGCTAAGTCT TGTATGGCTC TGGATTTTAC CTGGATTGCA AATCGTCAAT
TTGGTCTTTT TCACGTACGT CGCCGCGAAC GCGCCGGATG CGGACACGGA GGGGGGACGC
TGGTTCTGGT ACTACACACC CACGGTCTTG TACGGTGCGG CCGTTGGAAC TGGTTTGCTT
GGTGGTGGCG TCTATATTCA CGGATATCAG CGCGTGGTCG CGGACAGCAC CCAAAAGGAC
CACTGTGAGT TTGCTTTGAG TTCCGTTTCG GTCGCCGAAG GTCTGGGGGT TGGATTTGCG
GATATTCTGA GTTTGTGGTG GCAGTCCTGT CTGTACAAGG CCAATAATCT GGCGGGAGCC
GTTGTCTCCT GCCCATTCTG AAATCACCTG GGAAGGATTT AGAAAGGTAT CGGGCGGTAA
G
|
|---|
| Protein sequence | MGSQKGLSES GVGIPNWSPP ACIESITKKS SNKLAIADHG RCRKMTMGPR RPVQGSELSY
QPVSIDGEAE WEGSCDLQGF SGTSHARQSL PSSTSSSLSP CCDSGTIMAF GALGVLNNMP
YVIMLAAAKS ISEGGTALVY LANVVPGLIV KISAPYWFDR VSYRRRLWTA SLLMGTAFVL
VGLCSRESID ESSSQTVSSR TYGQLLGVAL MSVQCGLGEA SLLALAGGMD AAALTAFSSG
TGVAGPAGYL WKIVLTSSLG WSLRRIAYTA ILLPILYAGI YQRCIEPILR GDAGDVVPEY
DTSQLEGPSI RDRRPETDVP LVPGETTGLG EELQVVDRSR STCDNDTSRE DCTNGSDASQ
DPLFTVPIAS MTGTQRFHRV LSLWRYIVPL FTVYAAEYVC QAGVWTALGF PVSNAASRNH
AYQTANACYQ TGVLVSRSSG NCFRLSLVWL WILPGLQIVN LVFFTYVAAN APDADTEGGR
WFWYYTPTVL YGAAVGTGLL GGGVYIHGYQ RVVADSTQKD HCEFALSSVS VAEGLGVGFA
DILSLWWQSC LYKANNLAGA VVSCPF
|
|---|
| |