| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48573 |
|---|
| Symbol | |
|---|
| ID | 7194736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011686 |
|---|
| Strand | - |
|---|
| Start bp | 239493 |
|---|
| End bp | 241824 |
|---|
| Gene Length | 2332 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183188 |
|---|
| Protein GI | 219125858 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.017831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAGGA GACAGCTACA TTCTCAGCTG CAATATCAGA ATTGGGAATC CTACGTTTGG
TCACTAGGAG TTCGTCGTCA CCGGTTCCGC AGGCTTCTGC GATCTTCGAG CGAGAACGTT
CCTCCGGTTG TATGCGAAAA AACTCGAACC CCGCTGACGG AAGCGGGACG AGGGTGGGGG
TCTCCAAAAC CAATCCCGTC CGTACCAATT GCCGCAGCCC TGGCCCTTTT TTCGGGATCG
GAACGACGTT TTTGGCTCCG CCCAACGCAC GCGAAAAACC ACCGGGGGGC ATCGCCGTCG
AACCCAACGC CCCCAACCGC AACCATAACC ACAACTCACA GTCAGGCAAA CACAACCCTC
TGCACAACGT CCATTCGGTT CATTGGAAAG GGTTGTTTAC CCCTTTTGTC CTATAGGGTT
CATCGTCTCA CATTTTGTGA ATCGTCTACA GTAGCATTGC TCTCCGTCCT TCGTCAAGAC
AGTCTCTTTC TCCAACACAA TGGCTAAAAA GAAGACTGCA GCCCCCAAAC CGGTTGAAGA
AGCGGCAGCC GAAGTCGAAG CTGTCCTGGC GGCTCCGCCG GTGGAGGAAC CGGAAACGCT
TGGAACCGCT CCCGTCCTCA CCCATACGGC ACCCTCAATG GACCCCGGGG CCTTTGAAAT
ACTCACGGAC GTCATCGAGT ACGAGGTGGA AATGATCTTT TCCGATCGTG AGAAGCGTGC
GGAGCGCTGG AAGACTCTCA CTGTAAGTGC CAACGACACC TGACGGTCGC CTGCGTAAGA
TCCGCTAACA CTGGTCTATC TCTTTAGTAT TTTTGGGACC TGCACCCGGC GCGCAACTGT
AACTTTGGTC GTCTCTACCT TCGTCGTTAC CTGGCGGAGC TTTTGGTGAA CGCGGTTGGA
GCCCCGCCGT ACGGGACGGA CAAGGACGAG GAGCTCGGTT TGGTGACTAC CACACCCAGA
GTAACTTCGC CCGACAACCT GGCAAAGTGG GACGTGGAAC GCTGGTCCGA CTTGCAAGAT
GATCTCGAAC ATATTCGTGA TATCCTTTTA CGTCAAGATG CCGTCCTCAA TCTAAAAGAC
GAAAGCATGG CGGAGAACCC CGAAATGGAC GAAGAACGAG CGGAGATGGC CAGTTTTGGC
AAAAAGTATC AAATACTCAT ACAGTGTCTC GAAGTGAACA AGGCTATTGC ACCTATTCGT
TGGGATCTCG AGGAGCAGAT CTTGAAGAAA GACGAAGGTC AGCCGGAACT GGATAAGAAA
AAGGTTGCTG AAGTTGTCAG GATCATCAGC GAGATCAAGA ACGAGCGCTG TGTGGAAGTA
GCCGAAACCC TTTTTGCCAA GAAGCCCGCG AAGAAAAACA AAGGTACCGA GACTTTTGAA
GACATATCGG CCCTCGCCAA GATCTTGGAC TCGAAGCCAT TCAAGTACGT ATTCCGGCAA
AAACCATCGC ATCCATGTAC ACATTTCTTT CTTTCGACTG CTTACCTTTC CTGTTCTCCC
TTTGCAGCTT GAGTTACGTG CAGAATAAGA TCGAGGTCGT CCTCCGCCGT TGGAGTTGTG
ATACGTTCGG CTCCGATGAT CCCATGCTGT TTCGTTTACG TTACGGCATC CCTCCCAGAA
GCGGTCTCGC CTTGCTCGCC TCTACGCCCG CTTTGGCTCG ACGCACTCCA AGCAAAAGTA
CCGGCGGACA ACGCAGTCCC GTCCCCTCTA TCAAAAAAGA AGACGAGGAC GACGAGGACA
TTCAGCGCCT TCGCGAGAAC CGTGTAGCTC TCGGCGAAGG ACATGGTGAA GATCCTTTGG
AGGAAAGCCG CACTTTGGCA GCCGAGGCGG CCGGGGAAGG CCGCAAACGT ACGGCGGACA
ACCAAGACGA GGACGAGGAA CAGGACACGA AACGCGTTCG TCGCCTCGCA ATTGACGATG
AGTTGGATGA AGACGACGAA GAGGACGAAA AAGAACGTGC GGCTCTCAGC GAGTTGCCCC
GTCGAAGAAC TCGTCGCCCC TCACGCCGCT TCACCGGCCC TCCTCCCGAT GACGGTATCT
TTGACGAGCA AGGCAAGGTT AAGGCTCGCC GCAAATGGGC CGAAGAGGAA AAGAACGCCG
TCAAGGTTGG GTCCCAAAAG TTCGGCGTGG GGAAATGGGC GGAGATCAAG AAGGAGTATG
GTGACATCCT GCGCAACCGC ACTTCCGTCC AGATCAAGGA TTGCTGGCGA ACGATGAACA
AGAATAATGA AGTCTGAAAT AAGGTCGAAG CCAAAGCGGT GGATGTTGAA ATTTGGGCAA
GGAACGCAAA AGTATGTCGG TGATTAATAA TAAAACTATT GGTTTTCCAC GC
|
|---|
| Protein sequence | MVRRQLHSQL QYQNWESYVW SLGVRRHRFR RLLRSSSENV PPVVCEKTRT PLTEAGRGWG
SPKPIPSVPI AAALALFSGS ERRFWLRPTH AKNHRGASPS NPTPPTATIT TTHISFSNTM
AKKKTAAPKP VEEAAAEVEA VLAAPPVEEP ETLGTAPVLT HTAPSMDPGA FEILTDVIEY
EVEMIFSDRE KRAERWKTLT YFWDLHPARN CNFGRLYLRR YLAELLVNAV GAPPYGTDKD
EELGLVTTTP RVTSPDNLAK WDVERWSDLQ DDLEHIRDIL LRQDAVLNLK DESMAENPEM
DEERAEMASF GKKYQILIQC LEVNKAIAPI RWDLEEQILK KDEGQPELDK KKVAEVVRII
SEIKNERCVE VAETLFAKKP AKKNKGTETF EDISALAKIL DSKPFNLSYV QNKIEVVLRR
WSCDTFGSDD PMLFRLRYGI PPRSGLALLA STPALARRTP SKSTGGQRSP VPSIKKEDED
DEDIQRLREN RVALGEGHGE DPLEESRTLA AEAAGEGRKR TADNQDEDEE QDTKRVRRLA
IDDELDEDDE EDEKERAALS ELPRRRTRRP SRRFTGPPPD DGIFDEQGKV KARRKWAEEE
KNAVKVGSQK FGVGKWAEIK KEYGDILRNR TSVQIKDCWR TMNKNNEV
|
|---|
| |