Gene PHATRDRAFT_38979 details

Gene Information

• Locus tag: PHATRDRAFT_38979
• ID: 7194694
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011686
• Strand: +
• Start bp: 21444
• End bp: 25049
• Gene Length: 3606 bp
• Protein Length: 1165 aa
• GC content: 50%
• Product: predicted protein
• Protein accession: XP_002183014
• Protein GI: 219125495

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACCCTC TTGAACATGT TCTTGTGAAC CTTTTGGGAG CGACGACACC GGATTCGTCG 
TACCGTCGGT TCTTTGAAGA GTACGGTATT ACTCAGGCCA GCGAGTTGGC CTCAATCACC 
GAGAATCGTC TTGCAACGGT GTCATATGGT GTTTTGACCC CTTCTGTGGG AGATACCCCT 
GCCACCATTG TTCGTATGTT TCTTCCGCCT GCCCAGCAGG ATCGGATCTT GAAGATTGTC 
AAATGGTTCC TCTCGAAAGG TACCGACGTG ACAAACGAAA CCTGGTTTGA ACTTACCCCT 
GAAGTCCTTG AGTATTGGCA ACCAGCCTCT GCTATTGTTG CCCCTGCTAC CCCTGTTGGA 
TCGGATGCTC GGAGTTCCTT TGTCGAAAGT GCTGCCGCAA AGTTTCGGAA GACAATCAAG 
AATCACTCCG TTCCGTACCC AAAGTTCAGT GAAGACCGTT TTTGGGTCAC TTGGAATACG 
AATATTCGTA TCAAGCTCCG TATCCATGGC GTCCAGTTGG TTCTTGACCC GGATTATTTG 
CCTGAGACCG TCGACGAGAC GGATACATTT GTCGAAATGC AGAACTTTGT CTTTGGCGTG 
TTCAACGATA TATTGTTGAC CCCTCGTGCG CGTGGAATCC TCCACAAGCA TGTGGATGAA 
TTGGATGCTC AGGCTGTTTA CCGCGACCTT GTTGCCTCGT ACGGTAAAGG TATCAATGCG 
CAGATCACTG CCACATCCAT TGAAACAAAG CTCACTTTGT ACTCATTTGC GACTTCAAAG 
AGCAAGACCT GTGTTGCTTT TTTGACGACT TGGCGCAATT TTATTTACGA TCTTGAACGG 
ATCAACGAGT TCCCCTTGCC GGATCACCAG AAGAGCGTAC GACTCAAGTC AGCTGTCCGT 
TCCCATCCGC AATTGAAACT TTTCCTCGGA AATGTTCAGC TTTACTCTCG GACCCATGTG 
GGTAAGAGTG CCGACGATTC CGATTTTGAG TATGTTTATG ATTTGATGCT CAAACATGCG 
ACTGATATTG ATCAGACCGA TTTGGAAGAC CGCGGTAACA ACCGCGGTGG CCGCTCAGCA 
AACAACGCGA AGTCTCAGTC TTCTTCCAAG TCTTCTTCCA AGAAGAAAAC TAACAAACTG 
ATTGGTAAGA AGCACAAGAA TTATGTGCCT CCTGAAAAGT GGAATGCTCT CTCTCCCGAA 
GAGAAGCGGA CCATTATGGA CCAACGAGGA CCTCGCCCTG CTCCAGCTCC TGCCCCTGCC 
TTATCGGTGA ACGCCGCTGC CACTCAGCCT CCTCCTACGG TGTATGTCAG CGACTCGACG 
GTTGTTGACA ACCAAAGCTC GCTTCGACTC ACGTCCCGCC TGCTGCCGGA CCTGGTCAAC 
TGCTTCGTTC GCTCATTTCG AATTCAGCTG CCCGCCAGCA CCCTGCTCCA TCGAATGGAG 
CCACGTCTGA CTCTTTTTCG GTCAATGGGA CCACCTATCG CCGCGAAGTG AACCGTGCTT 
CTGTGCAGTA CCGCCTTTCC ACTCACGATG TTTCGTTGAA CAAGGACTCT TTGATCGATG 
GTGGTGCCAA CGGTGGCCTT AGCGGCTCCG ACGTAACCGT TATTTCGCAA TCCCTGTTGG 
AGGCCACAGT CTCTGGAATT GGAAATTCGG AATTGACCAA CCTCCGTTTG TCAATGGTGG 
CCGGACTCAT TCACACGACG GATGGTCCCA TTATTGGTGT GTTTCACCAG TATGCTCACC 
TTGGTACTGG CAATACCATT CATTCGTGCA ACCAAATGCG CTCCTGGGGA GTCACGGTTG 
ACGACGTCCC TCGTACTTTT GGTGGCAAAC AGCGTATTGT CACGTCCGAT GGTCGTTTTG 
TCATCTCGCT TTCGGTTTCT GGCGGACTCA CTTACTTGTC TATGCAGGCT CCTACCGAGG 
AGGACCTGGA CACTTTCGAA TGGGTGCCTT TTACCGCTGA CAACGAGTGG GACCCAAATG 
GGGTCTCTTC TCCTGCCGCT GCCGACGATG ACCTCAGTTT GCAGCTTCCT GCCGGCCATG 
TCCCGTTCCG TGATGAACGC ATCAATAACT TTGGTCTCCT TGCACATTCC GCGGCTGTTA 
GTCGATCCCC TTTGAATGCC GATGCTTTGC AACCCAATTT TGGATGGGTT CCCAGTGCTT 
GTATCTCTCG CACGTTTGAG AATACCACTC AATTCGCTCG TGCCGATGCC CGTTTGCCCC 
TGCGCAAACA CTTCAAGTCG CGTTTCCCTG CTGCCAATGT TTCTCGTTTG AACGAAATTG 
TGGCAACCGA TACCTTTTTC TCGGATACCC CTGCGGCCGA TGACGGCATT TTTAACCATG 
GTGGGGCTAC GATGGCCCAA CTTTTCGTTG GCAAAAGTTC GCAAATCACA TCTGTCTTCC 
CGATGAAGCG TGAATCCCAA TTTGCCCATA CTTTCGAGGA CTTTATTTGT ACCCATGGCG 
CTCCCGATGC CCTCCTCAGC GACAACGCTC GTGCTCAGAT CGGTCAGCAA GCACTTGAGA 
TTTTGCGTAT GTATGCAATC GACGATATGC AGTGCGAGCC GCATCATCAA CACCAAAATT 
ACGCGGAACG CCGCATTCAA GAGGTGAAAA AGATGGTGAA CACGATCATG GATTGTACAA 
ACACTCCTCC GGAATATTGG TTGCTCTGCT TATTTTATGT GACCTATTTG CTCAATCGCC 
TTGCTGTTGA AAGCTTGAAT TGGCGTACCC CGCTTCAGGT TGCCCATGGA CAGCGTCCTG 
ATATTTCTGC TTTGCTCCTT TTCCGTTGGT TTGAAACCGT TTATTATTAC AATCCTGACC 
ATGCGTCTTT CCCATCGGCT TCTCGCGAGA AAACTGGTCG TTGGATTGGT GTTGCTGAAC 
ACAAAGGTGA TGCGCTGACT TATTGGATTT TAACCGACAA TACTCACCAA GCCATTGCTG 
GTTCTGTTGT TCGTTCAGCC AATGTCGATA ATGGTTTGAA AAACCATCGT GCTGCGAATT 
CCTCTCCCGA TGGTGGGGAG CCTTCGAATC CTAAGCCCAT TGTCTTGGCT ACGAGTGACC 
TACGCCATGA TGCTACGGTC GATCCATCTT TTGAGAAATC CCCTGCATTC TCTCCTGACG 
AATTGATCGG CAGGTATTTG ATCCGTGAAG CCCCTGACGG CCAGAGCCAT CGAGCCCTTG 
TTGCTCGTAA AATTATTGAT GCCGACTCCG ATAACCATCA GACGATTTGC TTCTTGTTGC 
AAATTGATGA AAAGGATGCT GACGAGATCA TTTCGTACAA TGAACTTTCC GATTTGATGG 
AAGCCCAACA ATCAGAGCCC GCTACGAACG GAAATATCGA AGATCATTTC AAGTTTACTA 
GTATTATTGG ACACCAAGGC CCTTTGCAAC CGACCGATGC TGGTTACAAG GGATCCTCTT 
GGAATGTTTT GGTTCAATGG GAAGATGGTT CCCAGTCGTA CGAACCTCTA ATTGAAATGG 
CTAAGGACGA TCCAGTCACA CTCGCGATGT ACGCGTCTGA CAACGATCTC CTTAACGTGC 
CCGGGTGGCG CCGCTTCAAT CGTTTGCTTC GCAACCGTGA TGACTTCAAT CGATCTGTTT 
CGTTAG 

 

Protein sequence

MDPLEHVLVN LLGATTPDSS YRRFFEEYGI TQASELASIT ENRLATVSYG VLTPSVGDTP 
ATIVRMFLPP AQQDRILKIV KWFLSKGTDV TNETWFELTP EVLEYWQPAS AIVAPATPVG 
SDARSSFVES AAAKFRKTIK NHSVPYPKFS EDRFWVTWNT NIRIKLRIHG VQLVLDPDYL 
PETVDETDTF VEMQNFVFGV FNDILLTPRA RGILHKHVDE LDAQAVYRDL VASYGKGINA 
QITATSIETK LTLYSFATSK SKTCVAFLTT WRNFIYDLER INEFPLPDHQ KSVRLKSAVR 
SHPQLKLFLG NVQLYSRTHV GKSADDSDFE YVYDLMLKHA TDIDQTDLED RGNNRGGRSA 
NNAKSQSSSK SSSKKKTNKL IGKKHKNYVP PEKWNALSPE EKRTIMDQRG PRPAPAPAPA 
LSVNAAATQP PPTLASTHVP PAAGPGQLLR SLISNSAARQ HPAPSNGATS DSFSVNGTTY 
RREVNRASVQ YRLSTHDVSL NKDSLIDGGA NGGLSGSDVT VISQSLLEAT VSGIGNSELT 
NLRLSMVAGL IHTTDGPIIG VFHQYAHLGT GNTIHSCNQM RSWGVTVDDV PRTFGGKQRI 
VTSDGRFVIS LSVSGGLTYL SMQAPTEEDL DTFEWVPFTA DNEWDPNGVS SPAAADDDLS 
LQLPAGHVPF RDERINNFGL LAHSAAVSRS PLNADALQPN FGWVPSACIS RTFENTTQFA 
RADARLPLRK HFKSRFPAAN VSRLNEIVAT DTFFSDTPAA DDGIFNHGGA TMAQLFVGKS 
SQITSVFPMK RESQFAHTFE DFICTHGAPD ALLSDNARAQ IGQQALEILR MYAIDDMQCE 
PHHQHQNYAE RRIQEVKKMV NTIMDCTNTP PEYWLLCLFY VTYLLNRLAV ESLNWRTPLQ 
VAHGQRPDIS ALLLFRWFET VYYYNPDHAS FPSASREKTG RWIGVAEHKG DALTYWILTD 
NTHQAIAGSV VRSANVDNGL KNHRAANSSP DGGEPSNPKP IVLATSDLRH DATVDPSFEK 
SPAFSPDELI GRYLIREAPD GQSHRALVAR KIIDADSDNH QTICFLLQID EKDADEIISY 
NELSDLMEAQ QSEPATNGNI EDHFKFTSII GHQGPLQPTD AGYKGSSWNS HSRCTRLTTI 
SLTCPGGAAS IVCFATVMTS IDLFR