Gene PHATRDRAFT_48493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_48493 
Symbol 
ID7203716 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011685 
Strand
Start bp675187 
End bp677184 
Gene Length1998 bp 
Protein Length551 aa 
Translation table 
GC content51% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002183008 
Protein GI219125478 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000192267 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GCCGCTATTC CGCAAACAAC GAACAAAGCG GATGTACATT TTTCGTGAAG CATTGAAAAG 
CCATGAACCT TATTTGCTGG ATCACCACGG TAAATGCACT GTTTCTGCTA CCGGTGTTGG
CCACTTTGGG CCCACACCGC AAGCTCAACC GTGCGCTGGC AGGTCGTTCG ATTCCGGGAC
AATACATAAT AGAATTGAAT CCAAGCATCT CGGATTCTAG GGGTTTTGCA ACCCACGTCC
TGAAACGCGC GTTCCGAGAC AGTATCATAG AGACCTACTA CTATGCCATG AAAGGATTTG
CTGTCAAGGA CCTCCCAAAC ACATTGTTGA ACTTCATGCT CAATTTGGAT GACGTGCTCC
TGGTATCAGA GGATGCCGTT GTCGAGGTCG ATGCTGTACA GATTGATCCG ACGTGGGGGC
TTGACATAGT TGACGGAACA ATCGACAGAA GATATAATTA CACGTATACG GGACTTGGTG
TCGAAGTGTA CATTCTTGAT ACGGGAATTC AAGCAAATCA TTCCGAACTC GAAGGGCGTG
TCGAGAGTTG CGTGTCCTTC ACTCCTGAAG GTACGTTTAT GGTTTTTTTG TGTACAACGA
GGCCAACATT GTATTATGGA AATTGCTCTA CGGCCTACTT CTAGTTGCAA TCACATTGTG
CAAACTCAAA ATCTGGAGGT ATGATATAGT ACTCACTGAC CGGTATTTGT CTCTTCTATA
TGCAGAGTGC GGATCCGATC TCAACGGGCA TGGTACCCAT GTGGCCGGAA CTGTCGGTTC
GAAAACATAC GGTGTAGCAA AGACGGTGTC CCTCCACGAT GTGAAGGTTC TCAACGCAAA
AGGTAGTGGA TCATACAGTG CAGTAATTGC TGGCGTTGAC TATGTAACCC AGATCAAGAT
GTCAGATCCC AGCCGAAAAA TTGTGATCAA TATGAGCCTT GGGGGAGGCA TCAGCACTTC
GTTCAACAAC GCGATAACTT CCGCAGCAGA TTCAGGCGTG GTAGTTGTGG TTGCTGCCGG
AAACAGCGAC GATGATGCCT GCAACTACTC TCCTGCATCT GCGTCGGGAG TATTAGCAGT
TGGTTCGATT GATAGCGATA AGCGCCGTTC GAGCTGGTCC AACTGGGGTA GTTGTGTTGA
CATCTTTGCA CCAGGATCCG GGATCCTGTC GCTTTCTCAA AGCAACGGCA CAACTACGAA
GTCAGGTACA TCTATGGCTG CTCCACACGT TGCAGGTGTT GCCGCGCTCT ACTTACAAGC
GGGAAGAAGC ACCGATTCTA TCGCATCGGA TGCGTTGGAG AATGGAATAA GCGATGTAAA
GGAATCTTCC AACCGACTTG TGCGCACTTC GGAATTGCCA CCGGTAGCCC CGTCTCTACT
GGCGCCCACT CGCTCGCCAA CCCGCAGACC TACTCCTAAT CCAACTGGCG CTCCCGTTAC
ACCGCAGACT ACGAAGCAAC CTACACGCAC ACCCTTTGCC ACTCGTGCTC CAACCAAGAA
CCCTACCCTT GCTCCGGCCA AGGCGCCCAC TCGTGCTCCC ACCAAGAAAC CCACCCTTGC
TCCGACCAAG GAACCTACTC GTTCTCCTAC CAAGGCACCC ACTCGTTCTC CTACCAAGGC
ACCCACTCGT TCTCCTACAA AGGCACCCAC TCGTTCTCCC TCCAACGCAC CAACACCTTC
TCCGGTATTG CCACAGTGCC AATCTAATGG CCAGGTGTGC ACCGCTTTTA GGCGATGCTG
TAGCGGATTC AGATGTCTTC GTTCGTGGTC ACCACAGCGT GGCCGGCACC GAGCGTGTCG
TCCTCGCTGG TGATGATGGG CTTCCAAGAC AATCGCTCAC TCCATTGTGT GGCCGGCTTG
ATACTCAAAT CGGTCTTGGT CGCCGTGAGT AAACTGTTAA GCGATCAACG TTGCAAGCAG
TTGTTTTGAC ATAGACGGTT TACTAGGAGC TTTTTCGGAA TGTGGTTTGC ACATATTGTA
GTCAGCGAAA AATTTATC
 
Protein sequence
MNLICWITTV NALFLLPVLA TLGPHRKLNR ALAGRSIPGQ YIIELNPSIS DSRGFATHVL 
KRAFRDSIIE TYYYAMKGFA VKDLPNTLLN FMLNLDDVLL VSEDAVVEVD AVQIDPTWGL
DIVDGTIDRR YNYTYTGLGV EVYILDTGIQ ANHSELEGRV ESCVSFTPEE CGSDLNGHGT
HVAGTVGSKT YGVAKTVSLH DVKVLNAKGS GSYSAVIAGV DYVTQIKMSD PSRKIVINMS
LGGGISTSFN NAITSAADSG VVVVVAAGNS DDDACNYSPA SASGVLAVGS IDSDKRRSSW
SNWGSCVDIF APGSGILSLS QSNGTTTKSG TSMAAPHVAG VAALYLQAGR STDSIASDAL
ENGISDVKES SNRLVRTSEL PPVAPSLLAP TRSPTRRPTP NPTGAPVTPQ TTKQPTRTPF
ATRAPTKNPT LAPAKAPTRA PTKKPTLAPT KEPTRSPTKA PTRSPTKAPT RSPTKAPTRS
PSNAPTPSPV LPQCAPLLGD AVADSDVFVR GHHSVAGTER VVLAGDDGLP RQSLTPLCGR
LDTQIGLGRR E