Gene PHATRDRAFT_48267 details

Gene Information

• Locus tag: PHATRDRAFT_48267
• ID: 7203370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011684
• Strand: +
• Start bp: 684636
• End bp: 686836
• Gene Length: 2201 bp
• Protein Length: 570 aa
• GC content: 50%
• Product: predicted protein
• Protein accession: XP_002182584
• Protein GI: 219124593

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000901628
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GGTTGCGCAG GGTTGCTTCC TTGCTTGTTT GCACGTCCTA AAATCAATCT CTCTAGAGTA 
GCATTCATTG CTTACAGTTG CTTTGTTAGT AGAGAGTTTC CTTGGTTGCG ATCGTGCGAG 
TGCCAATCCT GCCGTACAAT CCCAAACCAA ACTGTACCAA TTCACCTTCG TTCCAACTCC 
AACGCTTCGA CAGACCCATC CGTCCCTACC AACATGACGG CGGCGAACAG CGTTCAACCG 
CAGAGCGATC ACGCTCCGAG CGAAGAGCGT CGAAAGCTAC TCAACGAGGA ATTAGCGGTA 
CCACTGGTGT CGAATTTCTT CCCCATTGAA GGCTACTACA CCGCGGCGCA AAAGGTTTTC 
GATAGCTTCC AGGATGCCTT TGAACACCGA CAGATCGACA ACGCCTTTGT CTACGGGAAA 
CGATACTGTC TCTTTGTAGT AGACGCTATT CCACAACACA ATTACTTCAA CGCTACAAAA 
ATCAAAAAGA TGCAGAACCA GCATCATCGG CAGGTCGACC TCGTCATTGA CCAACTCGAC 
GTCGTGGCGA CGTGGATGGA CGAGTCGGAA ATGGAGCGCC AAACGCGAGA GCGAGAAGAA 
GCCAAACGAC GACGACAGCT CGCTATTCAA AGAGCCAAAG CGGAAACTGT GCGCTACCAA 
CAACAGGAGC AGGAACGCTA TCGCCAATTG CAGCTACGGT TCGATCAACA CAAGACACAC 
AAAGAGAGTC TCAATGAGGA TCCGGAGCAC GTACAGGCAT CGGCGATGGA AAAGTTGGAA 
AAGCTTCGAG CTCTCCAAAA TGGTGTCGAT GTGGCGGCAC GCATTCCCCA AGATCCTTCC 
GGCGAAGAAG CGGGCAAACC TGGATCACGA TACCGCCTTT TATCGGATTC CGAAGAAGAC 
CACGCCGAGC AACAGCAAGG CGATCAAAGG AATCCACCCT ACGATACAAT CATTAGTGGG 
ACCGTTCTGC CACCTCCTTT ACCCCTTCCA AGTGCACCGC CATCCTACGA TGCCATAGTT 
ACATCTCGGT CGTCCCGCAA CTTTTTGGGC CCGGCAGTGC CCTCGGAACC ATTCCCCAAA 
TCGACATTTT TGAACGGCAA CAAGTTTGTG GACGAAACGA CGGTAGCATT GCCCGCAACC 
CCCGAAACAC CAGCACGCCG CCAGCGCGTT CCTATGCGAG AGCTTCAGCA CCGGTACAAG 
CAAACATACG TAAAATACCA ACAGGCGGGG AAAATCAAGG TCTCCGGTAT CAACACTTAT 
CAAGGGCGGT TAATCGAATC GACCAACGGA TGTACAGTCA TTTCAGCTTT AGTCGCCGCG 
CATCAATTAT CCTCTCGATC GGGGGCAGTC ACGGACGCAA CCGTCATCAA CGTGATCGAT 
CGGCAATGTG GACCACTCTT ACGTGAAATA CGGGGCAAAC TTGGCTTGGG TGGTCACGCT 
CTGATTATTC CATCTGATGT ACACGATCAT CTTGTCGATC ACAACATATT GTCACAAGAG 
ACATTCGTTG GTGCCGCCGG CGGCAACATA TTGGACGAAG GCCACATGAA CGAGTTTCTC 
AAACTTTTGC AAGGAGATAG CGCACAGCAT GCCAAAGCTG CCGCCACACT ATTTTTTCGT 
GAGCACGTCA TTTCAATTGT TAAATCACAG CATGGCAAAG CCATTAGTGG TAGCCTTAGT 
AACCAGGGCT TGTGCTGTTA CGAATTAATC GATTCAATGC CGGGAATGTT TGATGGTGGA 
CGAGGCATGG CGACTCGTAC ACGTTGTACG GATATGGATT CTTTGCAAGT TCTATTGCGG 
TGGTACGCCT CGCGAAAATT TTCTGACTCC AACTGTTCCT ACATTGACAA AACCATTTGG 
GATGACAGCA TGGCTGACTT TGATCCCCGT GTCTTTCAAG GATTTGTTTG GGCGGCAGCC 
TCTTGAACGA ATAAGTTTTG CAAAAGATGT CTCGGCAAAA GATATACGTG ACTTTTTTCC 
ATTGTTCGGC TATCCGCGAA TGCGCGGCCC TTGCTTGTAC AACAATCCGC ATCAGAATTG 
AAATTAGAGC CTACCAGAAA CGAAGCTCCA AGTGGTACAT TGATAATAAA ACCATCTTCA 
ACGGAACAAA AAGGAAACTG CTGGAAAACT TTGTTTCGCC GTCATTCAGG AGTCCAGAAT 
CTTGGGAAAT TTGCGGAGTT CAGTTTTTCT ATCTTGATCT C 

 

Protein sequence

MTAANSVQPQ SDHAPSEERR KLLNEELAVP LVSNFFPIEG YYTAAQKVFD SFQDAFEHRQ 
IDNAFVYGKR YCLFVVDAIP QHNYFNATKI KKMQNQHHRQ VDLVIDQLDV VATWMDESEM 
ERQTREREEA KRRRQLAIQR AKAETVRYQQ QEQERYRQLQ LRFDQHKTHK ESLNEDPEHV 
QASAMEKLEK LRALQNGVDV AARIPQDPSG EEAGKPGSRY RLLSDSEEDH AEQQQGDQRN 
PPYDTIISGT VLPPPLPLPS APPSYDAIVT SRSSRNFLGP AVPSEPFPKS TFLNGNKFVD 
ETTVALPATP ETPARRQRVP MRELQHRYKQ TYVKYQQAGK IKVSGINTYQ GRLIESTNGC 
TVISALVAAH QLSSRSGAVT DATVINVIDR QCGPLLREIR GKLGLGGHAL IIPSDVHDHL 
VDHNILSQET FVGAAGGNIL DEGHMNEFLK LLQGDSAQHA KAAATLFFRE HVISIVKSQH 
GKAISGSLSN QGLCCYELID SMPGMFDGGR GMATRTRCTD MDSLQVLLRW YASRKFSDSN 
CSYIDKTIWD DSMADFDPRV FQGFVWAAAS