| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48136 |
|---|
| Symbol | CAF1-subunit-A |
|---|
| ID | 7203288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011684 |
|---|
| Strand | - |
|---|
| Start bp | 299631 |
|---|
| End bp | 303974 |
|---|
| Gene Length | 4344 bp |
|---|
| Protein Length | 1435 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | chromatin assembly factor subunit |
|---|
| Protein accession | XP_002182657 |
|---|
| Protein GI | 219124745 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.846168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTTTCG GAACACGTTT ATGGAGCATG ACTCAAAATA CTCCGTATGT CGTTGTGTTC
GGAAATGTGC CACTGGGAGA CGGGGACGTC TTCCGGAACT TATGGCCAGT CCGAAGAACT
AGTCCCTCCA CGACTAGGCG GAAAACCCGG AAGTCGAAAT CAAGAACGGG AGGAGGTCGC
GGCGCGGACG GTTCGAATGC GCGCCGACCC ATCCCTGTTC CGTACGCTCG CAATGCGGAC
GGACGGATCC GATGCGTTCC CTCTCCTGCA ACACTCTCGT ACACGGCACC CACGGTGTGG
GTCGCCTATG CGGATCCGAC TCTTCGCGTC TTTGGTGTGT ACCTATTCCT TCCTCGGACA
GGTTCGTTAC CTACCCACTG CTACGACGAC TGCACCCGGT GGTTTCGACA ACCACTATTG
CACTCTTCTA CCAAGTATCC CCACACGCAT CGGTTCCGAA ACGCTGTGTA GACAAGCACT
CACGAAAAAA CAACGAGACA GTGCGACGCC GTATCGGCTC CAGTTTCGTT CACCCTTCCC
CAGAGTCGCG CGCGATCGTT GGTGAACAAC ATGCCTTCCC TTGCCTCCAT CGAAGTTCCT
TTGGACATCG TCGAGGATGA CAATGACCAA ACACACCAGG ACGACACCAC CGGACTAGGC
AAACGTCTAC AAAAGTCAGT TGCAACATCG AAGGCTTCCG TGGTCACCGT CACTTCCGCT
GCGAATGCGT CGCCCTCGTC GAACGCTGCG GCGGACGACG CGACGCCGTG CGGGAGCGTT
CCGGAAACCC GCAAAATAAC TCCAACAGAT ACCAAGCCAT CCCGTAGTGC GTTGCCTCGA
CAACAGCAAA AGACACTCGC CGGATTCTTT GCGGTTGGGA AACGATCACC ATCGTCCGTC
CGCCCGACGA ACCCGCGGAA GGCGTGTGGG AGCCGTACGA CGCTCCGCAC GGATTCCACG
ACTCCGACGT CCCTGCCCCG CACCGCCGTC CCCGTGACGA CGACGACGAC GACAAACAAG
GCCAATACCC GCAGTGCGCG GTCCCAGTCC CAGGCTACCA CTCCCGCCGC TCGTCCCGTC
GTGCCATCCT CCGTCGGGAC CCGTGCCGGA CTCGGACCCC AGCAGGCGGC CCTCATGGAC
ATTTGCCTCG GCCGTGTGAA TCTCCTCCCT TGCTTCGATC ACAACACACC GAACGATCGG
CGGGATCCGA CGACGCCACC ACCACCAACG GTCGCTTCCG CAACAAAAGA CGCGCCGACG
ATTCCACCCG AGGAGGCCTC CACAAAATCA ACGACGGATC GGGGCTCCAG GGGGAAGACG
CTGACGACCG ACACGCACGA ACCAGCCGTC GTGGATCTTA CAATTGATAC CGTGGGAACA
AACAAGAGTT GTACCAAGAC GATCGTGCCC ACGGGTACCA CCCAGAGCTT ACGGTCAGTA
CACGATGCCG CGATGGTGCA ACCAGGCCAC GGTTCCGCCC GTCTCGATAC CTCGAGTCCT
CCTCGTGCCA AAGTAGACAC AGAGGCCTCT TCCGACCACC GTACGGTCCA TTCCACCAAC
GAAACACAGA CGCGTCCGTC GGCGCAATAC GACTCACTCC GCCTTCAGGC TCAGGCCCGC
GCCCAATCTG TGTTGCAACG CTGCCGAACT ATTGCGGAAG AAGACTTTAC CGTGGCCTTG
CCCAAAATAT CCCCGTTGTC GAAAGATGAG ATTTTAGCCA CGGAATCGAG TGACTTTCCG
GAACCAGCCG TAGAATGCCT AGCGGCACTC GTGGAAGGCA GTGCTTTGCC GCTGGCAGCG
CTGGCGGCAT ACGTTGCGAA CGAGCTCAAT GGAATCTACA ACACCAAGGT ATTTACCCAC
ACTCTCGTCA CGGCCAAGAT CCCGCTCGTG GCCAACCGTA AACAATACGT AAAACACCCG
TCCGCGGCCT CGGTCACCGG CGACGGGGAT TCGGTAGCGG CACCGTCGCC GCCACCCGTC
CGTGCACTGG AAGACGATCG GCCGGATCAC GTATGGCGAT GGGAATTGAC CGTTCCGGAG
TTGCTGGAAC CCGTCTCGCG CAAGCTCGTC CTCAAAGCGC GTTCCGCGCG TCGCAAGCTC
GCGGCCGAGT TTCAAAGCTG TGCCAAAGTC CTCCAAGTCT TGACCGAAAT GGACGCCTGG
TGGTTGCGGG AGCCAGCGCC ACCCCAACCA GCCTCGACCA AAAAATTTGA AAGGCTCACC
ACTCGTCTCG TGCTCGAGCA AACACGCTTG CTCAAGTACG CCCGGGACGA AGAAGCGGCC
AAACTCGCGG AACAGGCCCA GCGGAAAAAG CTACGGGAGG CGTCCGTCGC CAAGGCTACG
CAACAAGCCG AAGCGGCCGC CGCTAAACAG CGAATCAAAG AACAAGCTGC CGCGGAAAAA
CAACGGAAAA AAGACGAAGC CGAGGCGGAA AAGCAGCGTA AAAAGGACGA AGCCGATCGC
AAGCTTCAGG AAAAGGAAGA TGCCGCACGT GAGGCTACGG AAGCGAAACA AGCCAAATTG
CGCAAGCAAA AATCCTGCTT GATGAGTTTC TTATCTGCAA CGAAGAAAGC TTCGGAAGAG
GCAACGCATG AGCATTTGAC ATCCTTTGTC GAAGCGATGG AAGCGGTAGA CTGCGAGATG
GAGCCGACAC TGGGCTCTGC TCCCACTTCT CCTCTCAAGC CAACGAAAAG TCATTTCGAT
GTCGTCGCCT TTCGTGCTGC TTTGGAACGA GGGGTCGTTC CTTCCAAGTC TCAAGCGTGT
AGCAGACATG GACGCTATTG GAAAGCAAGT CGACACCGCC GGACAAAAAT GGTAAATATG
GAGGTTTTTG TGACTGTAGT GCCGGAAAAT GGAGCCTTCG GGGCCCAGCC CTTTGCAGAG
CAGCAAACGA TAACCGTTCC AAACAAATAT AAATTCCTCC GGTTTCACGA AGACGTTCGG
CCACCCTATT TCGGCACGTG GAGTAAAAGA GGTTCCATTG TGACGGGAAA GACACCGTTT
CGGAAAGAGA CCACTCTATT GGAATACGAC TACGATAGTG AGGCGGAATG GGAAGAAGGT
GACGACGAAA TCGGAGAAGA TTTGGAGAAC GGCGAGGGAG ACGATGATGA AGAAGACAAA
GAGGAAGAAG AAGCCGCAGG AGACGACGAA GACGGCTGGT TGGCTGCCGA CGATGAAATC
GATGACGAAT TAGACGATGA AACGAGAAGG CTTCGTATAA AAGCCTTGGC TGCTGCCGAT
AGTCCGAAAC AGAAGGAACA AATCGTACAT GTCATCGCGC CGAGAGATGG CAAACCTATC
GTTGACGCCC ATGTCTCCTG CGCTGCTAAA TGCGTTCAGG GCTTGGATGT TCGGCAGGCC
TCTCGTATTT TAGCATCTCA TAAGGCATTG GTTCTATATG ATTGCGATTT ATTTTTGGAC
GCGTTTCCCC CCGAGTTGAT CGACGAAAGC TTCTCCGATG CTTCTCCTGC CGAAGCTAGT
AACAAGGCAC CGGGAAGTCA GGAAATGTCC GAGGACGATT TCAAGACCGT TGCCAAGTTT
GTCCACAATT GCACCCTTGC ATCGAAAGAC AAGGTCGTCG ACGAGCTTCG AAAGGCGCAT
GAAAGCGTCA CTAGCAGCCG TGCTCATGCA TTGCGAGTGC TCGAGTCCAT GGCCGACAAA
AAGAAGCACC CTGTAAAGGG CATCTATTGG GAGGTAAAAG GTGAAGTACT CGATAAGCTT
GGACTAGAGG ATCTCAAGTC TGTTGAAAAT GATTCACAAG ATGTACTACG CACTATTGCG
AAATTTGTAC ACAATAGTAC ACTCAATTCA AAAGAACGTG TAGTCGACGA GCTCTTGATA
GCTCACGAGT CGATTGCATC GAGCCGCGCG GAAGCCATGC GCATTCTCGA GTCTGTTGCG
GAGAAACGGA AACATCCTGT CAGTGGGGCT TACTGGCAAG TGAAGGAGCC GGCCAAGTCG
GAGTTGGGCT TGGCAGACTT GTCGTCGAAC CCGCCAATCC TGCCTGGTAC AGAAGCACTA
GCGACTGCGT TAACTATGCC CACTGAAAAA GAGAGGAAGG CTTTACAGGA CACCCCATCG
ATCAAGGCGA CATCAACGTC AGGTAAGAAG CGAAAGACTG GGGTACAATT AACTGCCGTA
TCTTCTACAA AGAAAGCTAC TTTGTCGGTA GCCGTTGACA ACGAGCCAAG AGCCGTGAAG
CCTCGCGAAC CTTTGTTCGA AAAGGTCTCG AAAAGCCCAT CTAAAAAGCG AAAAGAACCG
CCTGCTTCAT CCAAGATTTT GACATCGTTC TTATCAAAAA AGCCAGCTGT CGAGTCGACG
TCTGCTACGC AGCCAATCGG CTAG
|
|---|
| Protein sequence | MCFGTRLWSM TQNTPYVVVF GNVPLGDGDV FRNLWPVRRT SPSTTRRKTR KSKSRTGGGR
GADGSNARRP IPVPYARNAD GRIRCVPSPA TLSYTAPTVW VAYADPTLRV FGVYLFLPRT
GSLPTHCYDD CTRWFRQPLL HSSTKYPHTH RFRNACDAVS APVSFTLPQS RARSLVNNMP
SLASIEVPLD IVEDDNDQTH QDDTTGLGKR LQKSVATSKA SVVTVTSAAN ASPSSNAAAD
DATPCGSVPE TRKITPTDTK PSRSALPRQQ QKTLAGFFAV GKRSPSSVRP TNPRKACGSR
TTLRTDSTTP TSLPRTAVPV TTTTTTNKAN TRSARSQSQA TTPAARPVVP SSVGTRAGLG
PQQAALMDIC LGRVNLLPCF DHNTPNDRRD PTTPPPPTVA SATKDAPTIP PEEASTKSTT
DRGSRGKTLT TDTHEPAVVD LTIDTVGTNK SCTKTIVPTG TTQSLRSVHD AAMVQPGHGS
ARLDTSSPPR AKVDTEASSD HRTVHSTNET QTRPSAQYDS LRLQAQARAQ SVLQRCRTIA
EEDFTVALPK ISPLSKDEIL ATESSDFPEP AVECLAALVE GSALPLAALA AYVANELNGI
YNTKVFTHTL VTAKIPLVAN RKQYVKHPSA ASVTGDGDSV AAPSPPPVRA LEDDRPDHVW
RWELTVPELL EPVSRKLVLK ARSARRKLAA EFQSCAKVLQ VLTEMDAWWL REPAPPQPAS
TKKFERLTTR LVLEQTRLLK YARDEEAAKL AEQAQRKKLR EASVAKATQQ AEAAAAKQRI
KEQAAAEKQR KKDEAEAEKQ RKKDEADRKL QEKEDAAREA TEAKQAKLRK QKSCLMSFLS
ATKKASEEAT HEHLTSFVEA MEAVDCEMEP TLGSAPTSPL KPTKSHFDVV AFRAALERGV
VPSKSQACSR HGRYWKASRH RRTKMVNMEV FVTVVPENGA FGAQPFAEQQ TITVPNKYKF
LRFHEDVRPP YFGTWSKRGS IVTGKTPFRK ETTLLEYDYD SEAEWEEGDD EIGEDLENGE
GDDDEEDKEE EEAAGDDEDG WLAADDEIDD ELDDETRRLR IKALAAADSP KQKEQIVHVI
APRDGKPIVD AHVSCAAKCV QGLDVRQASR ILASHKALVL YDCDLFLDAF PPELIDESFS
DASPAEASNK APGSQEMSED DFKTVAKFVH NCTLASKDKV VDELRKAHES VTSSRAHALR
VLESMADKKK HPVKGIYWEV KGEVLDKLGL EDLKSVENDS QDVLRTIAKF VHNSTLNSKE
RVVDELLIAH ESIASSRAEA MRILESVAEK RKHPVSGAYW QVKEPAKSEL GLADLSSNPP
ILPGTEALAT ALTMPTEKER KALQDTPSIK ATSTSGKKRK TGVQLTAVSS TKKATLSVAV
DNEPRAVKPR EPLFEKVSKS PSKKRKEPPA SSKILTSFLS KKPAVESTSA TQPIG
|
|---|
| |