| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48048 |
|---|
| Symbol | |
|---|
| ID | 7203409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011684 |
|---|
| Strand | + |
|---|
| Start bp | 36946 |
|---|
| End bp | 44575 |
|---|
| Gene Length | 7630 bp |
|---|
| Protein Length | 2255 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002182464 |
|---|
| Protein GI | 219124342 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.184745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAGTCGCATT CGCTTTCAGT TAGCTAGTTG GTCCACAAAG GTGCAGCCTT GTTTACAGCT
AGTGTTACGC AAAAAAGGTG GCAGAACATC AAGACTCACA AAAACGACCA CAGACAGGTA
TCTTTCGTCA CCAACCAAAA AACGATCTTC TCTCGGTAAG TTGGAAATGA AGACAATAAA
ATGCCAACCC GAAGCTACAA GGATGCATTC TATTATTGTC GATCTTTAAT GAAACAGTCG
CTCCGGTCCT CCGTGTGATT GATTCTCACC ATTTTGCGTC TTGCTTCAAG AATGTCTGGA
ACTCCCGATC ATCCGCACGA TCCCGCGGAC GTCGCTATTC AACAGGGAGA AACGAACAAG
CTCTCGTTGT CCAATCCTAC ATCTCCCATG TCAATGGACG ATGAGCAGCC TTTTCCCCAT
ACACCTATAG AGGACAGCGA CCAAAGTCGA AGCTCGGCTG CAATTTTTGT ATCCCGTGTT
TCTCAGCCTC TGGTAACCTT GCCTCCTTCT TCAAGACATT TGGCGCGTAC TGCGGGGTCT
TCGAAGCGTC ATGAAGGAGG CGAAAATCCA GTGTGGTTGG CTCAGCCTCC CTCAGTGTCA
TCCATCAGTC ACCGAAATAT CTGTGATTTT GGAAACAAAG GATTCGACAG CGACCGGGGT
TGGTATTTGC GAGAGTCTTG CTTGCTCTCG ATGGAAGTTG GCAGTCAACG TCAAGTCGTT
AGCACGCCGT GCCGACGGGA CTGCAATGGG CAAATTATGC CCGTGGCCGT CCAGTCACCT
CTCATTAGCC GCGACGAGTC TTTTTTTCGC GATCGCAAGA AGGTTCTCCA AGACGCGATG
TCCGAGCGTT CCAAGTACGA CATTCAACTC AACAACGAAG TCGGGGCGTT GGGAGGCGCC
TGGCGTGGCA TCGTCAGGAG GTTCATGTTG TGGGCCTTTG ACAACGTCAA CGCCTTGCAG
CTGAGTCGGG CCTTGCAGCT TCAGTTGCCC TTTCAGACGG GCTACGAGTC CTACTTGACC
TCGCAAGTCA TCGAAGCCCT TGACAGGGGC GATCCCAGCG AAGTTGCTGA TGTCTTGAGT
GCCGCGTTTC TCAACCGGAA TGTCTCTCGC GTCATGGTCC AGAACCTAGG ACCTCGGTAC
GATCTTTTGT GGCATTGGAG TACCGCCATC ACCTGGAATC GGGCCTTTGA CGCTTGGGGG
CAGTTCCCGC TCGTAGGCAT TACGGGTTTC CCTGCCACGG AGAACTTTCC TTCTACGCGC
AACCACGCCT TAGCATCCAT CTTTCGGGTG CTATTGGGAC AGGGTAACTG GATCACTCGC
GTGGTCACGC AAGGACGAGA AGGAATATTG ACGGACAACC CAAACAACAA GGCGCAGAAT
CTCGCACCCG AGTCCAACGG CTTTGAACTT GCAAACCGCA ACCAGTACGG AACTTACTTC
GGACGCGTCA AGACGAACGA GTTTCGATAC GCACATCGGC TTCCTACTGA CGAGTCAATC
GTACGGACCT TTGTCGCTAG CCCGATGGCC ACGATGTCCA ACAATGGGGT TGTACACGTT
CTTCGCATGC TTGACAAGCA CTGGCACAAT ATGCTCTCAC AAGAATGGGG CAATTTCGCT
CACCAGCGAA TGGAACAGTT GGACCCCTTT GAAACTCTCC GTTTCCATAT GCCCCTAGTC
CTCGTTACGC TCTCAAATTT GCGAGGTCGC AACGCATGGG ATGCCGAGGT TTTGGGCCCG
GCTGTTCGCA AGTTGCAGGC TCTGAAGCCT GGTCTGGATA CTGCTGCTGC TTGGAAGCTG
GCAAAGGAGT TGGTGGATGA TGTAGCGGTG ACTGTATCGG GTGGTGTTGC CTCCGTCTTT
GTACCCCTTC GATCCTGGTT GAAAGCTATA AGAGAATCCT TGGACCGTTT GGAACGTAAA
GCTGGAGAAG TCCTGAAGAT TGTCTCGTCT GTCGAAATGG GCATTCGCCT CGGGCATGAT
CTTGTAACCC AAGTCAGTTG GAAGGTGCCG TCGGATAGCG TTTTGAAGGC TGCAATTCTA
AATCATATCC GAGGGAAGGA CAAACAAGCT GTCATAGCGA ACGATCAGGA TGCTGCCGAC
GCACCAGACG CGAACGCTGT GGACAGTTGG CGTATCAGGA GTGCTCTTCA AAAGACAACC
CCGCGTGATA TGCGCACGTT GATTGAGCTT GTCAAGGGCA ATCTCGAGCA CATGAAGGCT
GCCCAGTTAC TCATTGGACG GGTCAAGACG CTGCTCCAAC GAGAACTTCG TCGTGGATAT
TTGAACCAAG CTATCCGTGA CTTGTCTAAA GGACCATACA TCAACGGTCC TTTGATGCGG
GATGAATGGT ACTGGCTAGA AGAGGAACAC GGCCAAGGTC TTCACATTTA CATAGGCAAG
ATTCCTGACA GCGGCCTGCA TCAATTCATC CACGTCGATT CCGGCAACGA TAAAACAATT
TCGTTGTCGA ATGGAAAGGT ACTAGCGCGA GCGTACATTC CCGTACCGGA ATCCATTTCT
CGAGCGCAAA AAGTAAGTCC AAAATGATCA CAGTCAGTGT ATCGGTCGGC TCTGCTTGTC
CCGGGTTCGG GTTCCTCCTC TTACACACAC ATCCGCGTTG TTACTAGGCG TTTATGACGA
TTGAGCTCGA GTATGGCAAG ACTTTCAAGT ACAGTGCTTT TATGGAGTTT TCCATGCTCC
GGATCGCCCT TCAACGACTT GGTACGTGCG GGATGCAGTG GTCAGTCGTT GCTCATTGAG
CCCTTCTAAC GCTTGACGGA CCTTTACCGT ACAGTTGTTG TGTCTCAAAT GAATTGCGAA
GAACTCGACA ATGCGCGCTT GAACGTTCTT CGGGAAATAC AGCGTTCCAA GCAAACCGTA
CTCGGTCCTG AGGACCTTAC GCCTGGCAAC ACGTACTATA CATTCGACGA ATCCAAACGA
CAGTACATAC CGTTTCTTTG CGAACCAACG AATTCGGTTT CCACGCAGTC GAAGAGAGCC
AAGTATGTGC GTGCACCGCC ACAATCCGTT CTTGTGGTGG GAGGAGGCCC GACCGGGCTC
TTGACCACAA TTCATTGTGC TGAAGCATGC TTGGCTACTG GAGGAGCCAT GAAACTCCAA
GAGGCCCGTG ATGCATTTGC GCAAGGAGGG TCTACATTTG AACGAGCCCA AGTCGTTCGA
CTTGATGCTC GTTGGATTTC CATGCTCCGA TACCATCTCG GTACAATTTT TGAGGACGTT
TACATTCCAG CGTCTGGGGA AACCGACGCA CAGTTGGGCA ATACCCTGTA AGTCAGAAGA
CTGTTTCAAG TACGCCTTTT TATTTCGCGA TTCTGGCTGA AGTACTCACC ATGATACTGT
GTTGACAATA CAGACCAACG CAGGGCTTTG TTGAGATTAC AATCAAAGAC TTGGAGAGTT
CGTTGCACAC AGAAGCGTCG CGTCTTTGGT CTCGAGGTAT CATTTTCGTC CATACAGACT
CCAAGGCCCG ATATGACGCA ACTTCGAACT CCATGATAAA GCAGGGCAAA AATCTGAAAG
ACGGTGATGT CGTTTTGCGT CCGGTGGATT CGCATGGAAA GGATTCTTCT CACTTTCACT
CCTGGAAAGT TTCGGAAGTG CGGTACACAA AGGTATTAGG GATCGAAGAC CTCAAAGTTG
GGGAGGAATA CGGAGTTTGG ATTCATCAAG AACAGAAAGT TCTCCCGTAT ACACTCGTAG
CGGTGGATCT CGATACCGAG GTATGCGCAT CATGAAATTG ACTGTCAGCG AGCGACTCGC
AATGTCTCCA TGGCCATGCC CTAACCTTCT ACTCTTGTTT TTCTCTGAAG TTGTACACAT
TCCGATCCCA TTCGAAGGAC AAAAGTAAGT TGTGTGTCAA CGCAAAGAAT CTACCCTCCA
TCTACCCTCC CGGAACGACT ACGAAAGCCC ACGCGGGTGT CCGTGAAGTT GTGTTCGAGG
GCCTAGGAAA CCGACAAGAG GGGGAACTAC CAAAGCAAAC AGTTCCATTT GATCCGATTG
AAAATGTCAA TTTTACGCTG GATCTCGGAA ATACCCATGT TGTCGAGGCC ATCGGGTAAG
TACTAACTTG GCCATCAACG CTGTAATGCG AAAGTTTATC GCTTTCGGAT ACGCACCCTC
ACCCCTCTCG TCTGTTTCTC GGTCTCGTAG AAAACAATAC CCCTCAGACG TTCACATCGG
TGTCACCACA AAAGAGCCTT ATGGCGTGTG TTGTATGCAG GGGTTGAAAG TGTCTATGGG
TATGCACAAT TTTGGAGAAA AACGATGGGG GACTGGGATC CTGGACGATA TACGTTCGCA
AAACGATCAG AACACGAGAA TCATCGGTGA TTTCACCAAG ATGGTCAGGG TTGTGCCTAT
CGTAGAGCAC ATGTATCAGA CCATTTCCAA GGATAAGGAT TGGCGCATGC ATTTCAGCAA
CGTCATCAAG GAAAGTGGGT TTCCGGAAGT GGCCGACTTG CAACCTGTGC TCCCTGAACT
GGTTGAGGGA TGCAGATTGC TCTCGCAAGC ATCGTTGAAT TTTCGCAGAA AAACTTTGCA
GACTCGTTTT TTCGAAACAG GGGACAATTA TTATCTCGGC ATGGAATTTC CCAGAGAATA
CGATGCTTGG AAGAATGCGC TGTCATTTAG CTTGGTGAAG AAATTGTCTG CAACTGGAAT
AAACTCCAGA GCGGTCGAAC GTCTCAGGTC ATTTTTGATG CATCATATTG ATCGTCTGTG
GTACAACGGG TGCTTGGAGA CTATCCGAAC CGGCGATGTT TACAATCCAG GAGCACGCGA
ACGCGTTCCT CGCCTTTATC TTATCAATTC GTACATGGAA ATGTCCCTGA GCGCCTTGCC
AATCGGTGAG AGCTTTCGGC TGGTCTCCGA TCCACAGTCG AAGTACGAAG TTCTGGCGAT
TTCATCGTCT ACGATTCTTG TGCGTAACGT TGAAGGGTAC TTATCTAAAT TCAAGAAATC
GACAAAGGTC TTGCGTGAAG GAAATCTGAC TCGGGGTCCC GATGGGAACC AAGAGTCCAA
AGTGGTAAGA GAACTGTTAA AATACTTTCA TCGGTTTTGT GATTGTCCGC TAAACATGAA
ACTCACATCA ACCAATGTTA TTGCAGGCGT TGGCTACGTT CGATGTGGGT CACTATGTTA
ATCATCGCAC CATGCGTCTG TTGAACAAGG ATCAGGGCTA CGTTTTCGCT TTCATCGGAG
ACGAGCAAGC AACACCTCAC TTTATGCGGT ACAGTGGGTT GACTGGTGCA TGTATCAACG
CCATGTCTTT CAACAACTTT ATCACGGATG CTGGTCGCGG TGTATCCTTC GAGGAAAGAC
TGCAGCAGTA TTCCGAAGAG ACGGACTGGT CAAATGGAGA AGTGGTCCAG CGAGGTACTG
GTGCAAATTA TGGGGACGAT GGGTTTTTAC GACCGGGATT CTCGTACCGC GACGGAGTAG
CGTTCTTGTA TTCAAAAATA GTTGAATTCG GGGAAATGGG AAAAGATGTG AATAATCTGC
TCACCCGAGA CTGGATGGTG AAGCTTACCG CTTCCCTTGT ACCTAGAGGC ATGGAACTAA
ACCGAGTGTT CCTCGAAGGT CTGCAACGGC ACTGGAAGGC AGCTGTATTT GACAAACTAA
TGGCCTCGGT GAAGTCCGAT ATTCCTGTTG ATGAAAAGGG AGCTAATGTT GTGGATGCGC
TCCGATCTAG CAGCAGCACT CTAGTGGAGA AGAATGCTGC GTCGCCTGTT TATTGGGACG
AGTTGACAAC GAGTTTACAA GTGGACACCG CCACTAGAGA CGTTCTCTCC ACACGACATT
TTCCCGTTGC GAAACGGCTT TGTGAGATTA TCAATGAGCT GATCGATTTT GCTAGCAAGG
CCTATGTTTA CAACGAGCGA ATTAGTTCAG AGCTGAGCAA CCAACCGAAA TCAGTGGACT
CGCTTATTGA CGACTTCTCC GTGGAGGCGC AGAACTTCGC GAACTCCTTG ACCCAATCAG
CAGCGTTTGC AGCAGGTGTG CTTGCGTTTC GTCTGGTGGG TAGCAACGTC GCCAACACGT
TTTCCGCAGT GTTTGCGGGG TTAAATATTC TCATTGCGTT CGGAACCATG ACCAACGTAT
CTCGTTATAA GATTCGAAAT GAGGAATGGC GCGTCTTTTT CGCAGACCAG AAGTTTTCTG
GCGTGAAGTG CGCTGTGTTC GCTTTGTTAA GCAAGGATGA CCAAGATTCT ACACCATTGG
AGCAAAATCC CTTTATTGAT ATATTGGAGA AACGAGTCAA GTTGTTCAGA GAGGCCGCTG
GCTACTATGG GTACAGCGAC CCAACTGAGT TTGATGAGGC GTACCAACAA TTGAAGTCTC
GTGCCAACGA CGCGAGTGAA CTCCAAAAGT TTCGAGATTT GTTGGTGACG GACCTGCTTG
TGGATACGTA CCATGTCAAC AGCTATGTGC AAGAAAAGCT TGTTGATGTT TTCCGAGTCC
TCGACGAAAT GATTTTTTTG CTCGACAGCA GGAAGTCCAA GTCCGCAAGC AAGGCCAAGC
AGCTGTTTGA CCAGTTGCTC GCGTATGATT CGGTGTTGGA AGACTCTTTG CAGCGAGGGC
CGGTTCGCTT TGGTTTCATC AAGCAGCGAA AGTTTTTGCA TTGGAATTTG ATAGCAGCTG
TCCGGTACCT CGGCAAGGTA TTGTGTTGTA TTCCGAGATC TTGTCAAAGT GATCGTGCTT
TGTTTCAAAG TGGAACTCTC GGTATTGTGA GAAGTCTTCA ATCACTTTCA AAGGAACAGG
ATTCGAAAGT TCTACGGCGA GAGAGCAGGG ACTTTGAGAC TCTCTTGTGG GCAACACGCG
AAAGCGAGAT TGCGTCCTTA ATATTTCTCT CGGGCTTCTT TGTTTTCTTC GCCTCCGTTC
TTTTCAGTGT TGCTCGAATT TTCAACATTG ATTCGCTCGA AAATGCCGCA TTCTGGGCTA
ATGCGGTATC CTCGTTTGGC GCGGTTTTGG CCGCATTCCA TCTTGTCCGG AAATTCTCCA
TTTTGTTCGG TCTATGGGTA ACCCTTTGGT TGAAGACAAG TAGTACGGAA GGAATGGATC
ATATCAATAT TCGTCGGATT CGTGACGTGA CATCAATTCA GGCTCTTCTG ACCTTAACCC
GTCTAGCTGC TGCCTCAGGT GCTGCTGTGG CCTTACCTTG GTCAGTGATA GAGAACGCTT
TTCCTAGTGT GATTACGCTG GACGAAGACT ATCCATTTTG GCTTGCTTCG GGTGCTGTGT
GTGCCGCAAT TCTGGCGACA GTGTTTTTCT TCGTGGTTGA GTATGTGGTC CGGTACAATC
TCAGCCCCCA ACTTGGACCT TTTGTCAGTG AACTTTTCCG AGACGAAATT GAAACCATGT
TCAACGACTT GGCGCAGCGA CAAAATGATA TAGACACAAA GGTTGTCCAG GACCGTGAAA
ACTGGGAGTA TGTTGCGAGA GAATTTTTGC ACAAATACCG TTTCGATACG GTGTTTGCAG
CTGATCGGTT TGGGACTATT TTTCAATACA TACAAGCTGG AATGGAAGGG AGCAGTGATT
CCAAAATTGA GAATGATTGA AGGAGCTTTA CATTTGCATT AATTTTATAG TGGTAGCGTT
GATATAAGTG
|
|---|
| Protein sequence | MSGTPDHPHD PADVAIQQGE TNKLSLSNPT SPMSMDDEQP FPHTPIEDSD QSRSSAAIFV
SRVSQPLVTL PPSSRHLART AGSSKRHEGG ENPVWLAQPP SVSSISHRNI CDFGNKGFDS
DRGWYLRESC LLSMEVGSQR QVVSTPCRRD CNGQIMPVAV QSPLISRDES FFRDRKKVLQ
DAMSERSKYD IQLNNEVGAL GGAWRGIVRR FMLWAFDNVN ALQLSRALQL QLPFQTGYES
YLTSQVIEAL DRGDPSEVAD VLSAAFLNRN VSRVMVQNLG PRYDLLWHWS TAITWNRAFD
AWGQFPLVGI TGFPATENFP STRNHALASI FRVLLGQGNW ITRVVTQGRE GILTDNPNNK
AQNLAPESNG FELANRNQYG TYFGRVKTNE FRYAHRLPTD ESIVRTFVAS PMATMSNNGV
VHVLRMLDKH WHNMLSQEWG NFAHQRMEQL DPFETLRFHM PLVLVTLSNL RGRNAWDAEV
LGPAVRKLQA LKPGLDTAAA WKLAKELVDD VAVTVSGGVA SVFVPLRSWL KAIRESLDRL
ERKAGEVLKI VSSVEMGIRL GHDLVTQVSW KVPSDSVLKA AILNHIRGKD KQAVIANDQD
AADAPDANAV DSWRIRSALQ KTTPRDMRTL IELVKGNLEH MKAAQLLIGR VKTLLQRELR
RGYLNQAIRD LSKGPYINGP LMRDEWYWLE EEHGQGLHIY IGKIPDSGLH QFIHVDSGND
KTISLSNGKV LARAYIPVPE SISRAQKAFM TIELEYGKTF KYSAFMEFSM LRIALQRLVV
VSQMNCEELD NARLNVLREI QRSKQTVLGP EDLTPGNTYY TFDESKRQYI PFLCEPTNSV
STQSKRAKYV RAPPQSVLVV GGGPTGLLTT IHCAEACLAT GGAMKLQEAR DAFAQGGSTF
ERAQVVRLDA RWISMLRYHL GTIFEDVYIP ASGETDAQLG NTLPTQGFVE ITIKDLESSL
HTEASRLWSR GIIFVHTDSK ARYDATSNSM IKQGKNLKDG DVVLRPVDSH GKDSSHFHSW
KVSEVRYTKV LGIEDLKVGE EYGVWIHQEQ KVLPYTLVAV DLDTELYTFR SHSKDKSKLC
VNAKNLPSIY PPGTTTKAHA GVREVVFEGL GNRQEGELPK QTVPFDPIEN VNFTLDLGNT
HVVEAIGKQY PSDVHIGVTT KEPYGVCCMQ GLKVSMGMHN FGEKRWGTGI LDDIRSQNDQ
NTRIIGDFTK MVRVVPIVEH MYQTISKDKD WRMHFSNVIK ESGFPEVADL QPVLPELVEG
CRLLSQASLN FRRKTLQTRF FETGDNYYLG MEFPREYDAW KNALSFSLVK KLSATGINSR
AVERLRSFLM HHIDRLWYNG CLETIRTGDV YNPGARERVP RLYLINSYME MSLSALPIGE
SFRLVSDPQS KYEVLAISSS TILVRNVEGY LSKFKKSTKV LREGNLTRGP DGNQESKVAL
ATFDVGHYVN HRTMRLLNKD QGYVFAFIGD EQATPHFMRY SGLTGACINA MSFNNFITDA
GRGVSFEERL QQYSEETDWS NGEVVQRGTG ANYGDDGFLR PGFSYRDGVA FLYSKIVEFG
EMGKDVNNLL TRDWMVKLTA SLVPRGMELN RVFLEGLQRH WKAAVFDKLM ASVKSDIPVD
EKGANVVDAL RSSSSTLVEK NAASPVYWDE LTTSLQVDTA TRDVLSTRHF PVAKRLCEII
NELIDFASKA YVYNERISSE LSNQPKSVDS LIDDFSVEAQ NFANSLTQSA AFAAGVLAFR
LVGSNVANTF SAVFAGLNIL IAFGTMTNVS RYKIRNEEWR VFFADQKFSG VKCAVFALLS
KDDQDSTPLE QNPFIDILEK RVKLFREAAG YYGYSDPTEF DEAYQQLKSR ANDASELQKF
RDLLVTDLLV DTYHVNSYVQ EKLVDVFRVL DEMIFLLDSR KSKSASKAKQ LFDQLLAYDS
VLEDSLQRGP VRFGFIKQRK FLHWNLIAAV RYLGKVLCCI PRSCQSDRAL FQSGTLGIVR
SLQSLSKEQD SKVLRRESRD FETLLWATRE SEIASLIFLS GFFVFFASVL FSVARIFNID
SLENAAFWAN AVSSFGAVLA AFHLVRKFSI LFGLWVTLWL KTSSTEGMDH INIRRIRDVT
SIQALLTLTR LAAASGAAVA LPWSVIENAF PSVITLDEDY PFWLASGAVC AAILATVFFF
VVEYVVRYNL SPQLGPFVSE LFRDEIETMF NDLAQRQNDI DTKVVQDREN WEYVAREFLH
KYRFDTVFAA DRFGTIFQYI QAGMEGSSDS KIEND
|
|---|
| |