Gene PHATRDRAFT_38462 details

Gene Information

• Locus tag: PHATRDRAFT_38462
• ID: 7203386
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011684
• Strand: -
• Start bp: 170723
• End bp: 174107
• Gene Length: 3385 bp
• Protein Length: 1089 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002182628
• Protein GI: 219124684

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTACCGG CCACCAGGCA AATGACTAGC GGAGCTGCTT ACTCGCATTT TTTGGATAAT 
GTATTTTCAC TTCCTCAAGG GCACCCAATC CGACTTAGTT TCGAACAACA AGGGTATAAT 
TCTGTTGATG ATCTCCTCAG TATTTTTGAG AACGAACTAG ATGCCCTTGG ATATGTGCCT 
CCAGCGAGTC CTGACACAAA TGAAGACCCT CAGTGGACCC CATTGCTCAT GGCGCACCGA 
CAGATTCTTC GACATTTCCT GCGTTGGCAG GCATCACTTG AACGGCAAAA GGGAAGTCCT 
TTGGAAAATT CGGAGCTTGT TGCATTGACA AGTGGAGATT TCATTTTATA TCGACGCTCG 
GCACTCGGAC AAGTCTCTAA TGTTCCGGCC ACCATCAGTC CTTCTCTGAA CAACCAGTTA 
AGTACGTCCA CGAAAGCTCG ATCGGCAGTC GACGAATTCA AGCGAGGAGT CAAGCGTGAC 
AAGACCCACT ACCCTATCCT TAAGGATGAC CGATACTGGG ACAATTTCTA CCGGTCTTTC 
GTGGTCACCG CGGTATCCCA TAACGTCGAA AAGGTACTTG ACCCATCCTA TGCACCAACG 
GACCCCTCAG AGAAGTCTCT CTTTGAGGAA CAGAAGAAAT TTGTGTACTC TGCTTTGGAA 
CATACACTTC AGACTGATAT GGGGAAAAAC CTTGTTCGCG AACATAGTTT TGACTTCAAT 
GCCCAAGAAG TTTTCCGTAA GGTTGTCAAG CACTACACAG AGTCTGCCAG TGCCAAGATT 
GGGTCCTCCA ACACTTTGGC CTACCTCACT ACGGCAAAAT ATGGCACATC CTGGACAGGA 
ACGGCGGAAG GGTTCATCCT TCACTGGAAG AACCATCTTC GTATCTACAA TGATATGGTC 
CCTATGGCAG AGCAGTTGCC TAAACAGCTT TGCCTCAGTT TGCTTGAAAA CGCTGTACAC 
GACATCCCTG AACTCCGTCA GGTCAAGATC ACCGCTACTT TAGACTTAGC TAAAGGAGGC 
ACTCCCCTCA ACTACGAAGG TTACCTGAGT CTATTGCTTG CATCTGCTTC TCTATACGAT 
AAAGGGAACA ACCTTTCCAA TTCTCGTAAT GTCAAGAGCA AGCGTAGCGC CTTTCTGACC 
GACCTCTCGT ATGATCAACC TGACTTCACC GAAGACAATG GAATTGACTA TGATATCGAT 
CTCTCTCCTG CAGTGATCTA TGAGGCCAAT GCTCACAACC GCAAAGTCAG TCCATCTGGC 
CACCGTAATC GCGATCCGGC AACCAATCGA GAGCGTCCGT ATATCCCTCG CGAGATGTGG 
AATCAGCTTT CAGATGATGC CAAAGCCATT CTCCAAGGCC TGTCAGCACC CGACAAAGGC 
CCTACTCGAT CCGGCGATGT CTCGCAACGT GCGTTGGAAG CGAATACCCA CGCCAAGATA 
TCGAACGATA ATGGCGAGTT CAACCGTAGC GAACCAGACA ACCAGCAAGC TGAAGCATTC 
TATGACTGTG ATCAAACAAC GGAGCTCCTT GCACACTTGA CTGACCGTGT GAGTCACATG 
GGAGACGGCG ATATCCGAAA AGTTCTTGCT GCATCCCGCC GTACACCAAT CAATTGTACC 
CAGTCATCGG ACAATTGACA ACAGTCTGTT CAACTCAACG TTCTGGAATA TCAAGTCTCT 
CGTCATTCCG TTGAGAACAA AACTGCTGCT CTAGTCGATC GAGGTGCCAA CGGTGGACTT 
GCTGGCTGTG ATGTCAAAGT TGTGAACAAG ACAGGACGGT CTGCTAGTAT AACGGGTATC 
AACGAGCATA CCCTGTCAGA TTTGGATATT GTCACTGCCG CTGGGTTTGT TGAGTCTCAC 
AAAGGCCCTA TCATTGTGAT TATGCACCAA TACGCCTATC TTGGCAAGGG AAAGACCATC 
CACTCCAGTG CCCAACTTGA GCATTACCGA AACACAGTCG AAGACCGGTC CCGCAATGTT 
GGAGGACAAC AGCGGATTGT TACCTTGGAT GATTATATCA TTCCTCTTCA TGTTCGACAA 
GGCCTCCCAT ATATGGATAT GCGGCAGCCT ACCGATAGCG AGTTCGAATC TCTTCCGCAT 
GTTGTGTTGA CTTCCGATAT TGACTGGGAC CCTTCTATTC TAGACAATGA AGTTGACATG 
GTGAACGACT GGTACGATGC AATGCAAGAT CTTCCGGGCA ATGCCTATGT TGAACCACGA 
TTTGACAACA CAGGTCAATA CCTCCACCGC CATATTGCGT ACTACGATCT CGATCGCGAG 
GACGCTATTG ATTGCATTAT CCAGTGTTGT AAGCACAATG TCAAACGCAA TGAACGGGAC 
TATGAAGCAT TACGTCCCTG CTTGGGATGG GTATCCGGTG ACACTGTCCG AAAAACCATC 
ATGGCTACGA CACAGTACGC TCGCGAAGTC TACAATGCGC CGCTACGAAA GCACTTCAAA 
TCGCGATTCC CGGCTCTAAA TGTGCATCGG CGCAACGAGG CTGTTGCAAC GGATACTATC 
TGGTCAGACA CACCTGCTGT TGACAACGGA GCCAAGTTTG CACAACTGTT TGTGGGGAGA 
CGTTCCTTAG TCACCGATAT TTATCCCATG AAAACAGACA AGGAGTTTGT CAATGCCCTT 
GAGGACAATA TTCGCCATCG TGGAGCTATG GATAAACTTC TGAGTGATCG AGCCCAAGTC 
GAAATCAGTA AGAAGGTTGC TGATATTACA CGAGCCTACA ACATTGACCA ATGGCAAAGT 
GAACCTCATC ATCAACATCA AAATTTTGCC GAACGCCGTA TTGCTACTAT TGAAGCTAAT 
ACCAATAACG TTCTTAACAA AACCGGTGCT CCTGATTCCA CTTGGCTCTT GTGCATTGCC 
TACATCTGCT ATGTCTTCAA CCATTTGTCC CATGAATCTT TGCATGATCG TACACCGCTC 
GAGACTCTTC TTGGTAGCAC CCCTGATATC AGCGTACTTC TCCAGTTTCA TTTTTGGGAA 
CCGGTGTACT ACCGGATCGA AGATCCATCT TTCCCTTCCG ATGGTACCGA AAAGAGCGGT 
CGCTTTGTTG GCATTGCTGA ATCTGTTGGG GATGCTCTCA CTTACAAAAT CCTCACAGAC 
GACACCAACA AGATCTTATA CCGCTCTAGT GTGCGTTCCG CATTGAAATC CGGAGAAACC 
AACCTACGCC TTACGCCACA GGATGGGGAG AGTAATTCTA AGCCTATCAA CTTCGTCAAG 
TCGCGTAGAA CTGAAAACAA AAATTCCTAT GCCTTAAAGA ATCTACCCGG TTTCACCCCT 
GAGGACCTTA TTGGACGCAC GTTCCTAACC GATACTCAGG ATGATGGGGA GCGTTTTCGT 
GCACGTATCA CAAGGAAAAT CTTAG 

 

Protein sequence

MVPATRQMTS GAAYSHFLDN VFSLPQGHPI RLSFEQQGYN SVDDLLSIFE NELDALGYVP 
PASPDTNEDP QWTPLLMAHR QILRHFLRWQ ASLERQKGSP LENSELVALT SGDFILYRRS 
ALGQVSNVPA TISPSLNNQL STSTKARSAV DEFKRGVKRD KTHYPILKDD RYWDNFYRSF 
VVTAVSHNVE KVLDPSYAPT DPSEKSLFEE QKKFVYSALE HTLQTDMGKN LVREHSFDFN 
AQEVFRKVVK HYTESASAKI GSSNTLAYLT TAKYGTSWTG TAEGFILHWK NHLRIYNDMV 
PMAEQLPKQL CLSLLENAVH DIPELRQVKI TATLDLAKGG TPLNYEGYLS LLLASASLYD 
KGNNLSNSRN VKSKRSAFLT DLSYDQPDFT EDNGIDYDID LSPAVIYEAN AHNRKVSPSG 
HRNRDPATNR ERPYIPREMW NQLSDDAKAI LQGLSAPDKG PTRSGDVSQR ALEANTHAKI 
SNDNGEFNRS EPDNQQAEAF YDCDQTTELL AHLTDRSVQL NVLEYQVSRH SVENKTAALV 
DRGANGGLAG CDVKVVNKTG RSASITGINE HTLSDLDIVT AAGFVESHKG PIIVIMHQYA 
YLGKGKTIHS SAQLEHYRNT VEDRSRNVGG QQRIVTLDDY IIPLHVRQGL PYMDMRQPTD 
SEFESLPHVV LTSDIDWDPS ILDNEVDMVN DWYDAMQDLP GNAYVEPRFD NTGQYLHRHI 
AYYDLDREDA IDCIIQCCKH NVKRNERDYE ALRPCLGWVS GDTVRKTIMA TTQYAREVYN 
APLRKHFKSR FPALNVHRRN EAVATDTIWS DTPAVDNGAK FAQLFVGRRS LVTDIYPMKT 
DKEFVNALED NIRHRGAMDK LLSDRAQVEI SKKVADITRA YNIDQWQSEP HHQHQNFAER 
RIATIEANTN NVLNKTGAPD STWLLCIAYI CYVFNHLSHE SLHDRTPLET LLGSTPDISV 
LLQFHFWEPV YYRIEDPSFP SDGTEKSGRF VGIAESVGDA LTYKILTDDT NKILYRSSVR 
SALKSGETNL RLTPQDGESN SKPINFVKSR RTENKNSYAL KNLPGFTPED LIGRTMMGSV 
FVHVSQGKS