| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_47949 |
|---|
| Symbol | |
|---|
| ID | 7203198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011683 |
|---|
| Strand | - |
|---|
| Start bp | 529665 |
|---|
| End bp | 531300 |
|---|
| Gene Length | 1636 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002182410 |
|---|
| Protein GI | 219124227 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCCGGAAAGC CATCGTCGTC AGGATGGACT TTGCTCGATG GATGTCCTTC CTCGGTGGTT
GGGACTGCGT CGAGGTAGAA GAGAAAGATT CCAGTAAAAC CTGGACCACG CGCTTGCAAG
ACGACCTTGA GGCTGTATGT TTCCCCCACA AAAATTTGGA CTCTCCCGAA CGTATAAAAA
TTCCAAACCG AACTGTGTCG GAAGAGGAGT CTCCTCGTTT GCGGCCGGCA GAGGTCCGGA
TACATTCATC GGAAATAGTG AACGAGGAAT GTCCACGCTA CGGGGACAGT GTACGAAAGC
CGGAGACGCA CGTACTCACG GTGGACCCGA AAGTGGCAAC TCACACCAGT TCTCAACCGC
AAAGAACCTT TCCCTCCGCG ACACTGCCAA CGCCACCCCA AAACAGGCAA AATATTCCGG
ATAACACCGC CAACAACCTG CCTTTGCGCA AAGAGGACCT TGCGACTCCT CCCAGACCAC
CTGTATTTTC TCGCGCACAT AGTTTCCAAT CGCACACAAA ACACCAAACG AGAGAACGAC
TCGGAAATCG GGATAGAATT CTTTCAGAGA TGCCGGCCGT CAAGAATTTC GACGACGATA
TAAACAGGCT TGTCGCTACG AGACATGGCA GCAAATATGG CTCTGGTGTC GAGGCAGCCA
ACCTTTCGGA AGATTCTTAC GTGGCCACGG AAACGAGTAT GGACTCGGGA GATCTCCGCA
CCCTGGAGAG GGGCGACCGT AGTCCGGATC TTTGCGTTGG TGTAATGACA GGTTCGCCAA
ATGTCGCATC AGGTACAGAG CAACAAGATC GATTCAGCGG TGATGCTTTC GAGGGCGATT
CCCGATCTAC CGACAGAGCT TTGCCCTTGG GCAAAATAAA CTATACACGA AAAGAAAGGC
ACTTTCGCTG GTTCGCTCAT GGAAAAATGT GGACGTCTAT TGCCGTTCTG CTTTCCATTT
GTGGGTCGTT GATGTCTGTC CTTTCCAGAC GAAGTACGAG GTTTGTTGTA CTAAGCGAGC
CACTCAATAT TGCTCCCGTC TATAACGCTG TGGACAAGAT CGGAATGATC AGAATGGAGC
TCTGCTACAA CACCTCTGTA GTCAGTGAAT CTGGCTGTAC GGTCATTCCC TTGACAACTG
AGGATGTTGA CGATAACATG TTTGAGTTGG CGCGGATCTT TTTGACGCTG TCGGCACTGT
CGGGCGTGTT CTTCACCATC TTCTTGTGCT CCGCTGTTTA CTGGCAATCA ATCAATCTGA
AGCCCATTGG AATTGGCTTC ATCGTAACCT ACTTCTTTCA ATCTTTTTCG ATGATTTTCT
TTGATTCCAT GATATGCTCT GACAAAAACT GTCGAGTAGG GTCTGGTAGT CTCTTAAGCA
TATTTGCCAG TCTCTGCTGG ATTGGAGCTT GCCTTGCGAC GGCAAAAATG GATGCCTTCA
AAATCATTGC TCAACGCAGA CGCCGACGTC ACGCTCGGCG TCTCGCAAAA ACGAGGAAGA
TGGTGAGAAA GGCTTCTTCG GAAACTGTCA AGACTACCTC ATCAAGGGAG AGCGATGGTA
GCAATTCCGT TATCGATCTG GAAGTAAATG GATAGGGGAA AAGTAGCTAC TTAAGTTTTG
ATAGTCGACA CTGTGT
|
|---|
| Protein sequence | MDFARWMSFL GGWDCVEVEE KDSSKTWTTR LQDDLEAVCF PHKNLDSPER IKIPNRTVSE
EESPRLRPAE VRIHSSEIVN EECPRYGDSV RKPETHVLTV DPKVATHTSS QPQRTFPSAT
LPTPPQNRQN IPDNTANNLP LRKEDLATPP RPPVFSRAHS FQSHTKHQTR ERLGNRDRIL
SEMPAVKNFD DDINRLVATR HGSKYGSGVE AANLSEDSYV ATETSMDSGD LRTLERGDRS
PDLCVGVMTG SPNVASGTEQ QDRFSGDAFE GDSRSTDRAL PLGKINYTRK ERHFRWFAHG
KMWTSIAVLL SICGSLMSVL SRRSTRFVVL SEPLNIAPVY NAVDKIGMIR MELCYNTSVV
SESGCTVIPL TTEDVDDNMF ELARIFLTLS ALSGVFFTIF LCSAVYWQSI NLKPIGIGFI
VTYFFQSFSM IFFDSMICSD KNCRVGSGSL LSIFASLCWI GACLATAKMD AFKIIAQRRR
RRHARRLAKT RKMVRKASSE TVKTTSSRES DGSNSVIDLE VNG
|
|---|
| |