Gene PHATRDRAFT_47870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_47870 
Symbol 
ID7203149 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011683 
Strand
Start bp298764 
End bp300273 
Gene Length1510 bp 
Protein Length402 aa 
Translation table 
GC content47% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002182363 
Protein GI219124128 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.504417 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CCGGTCTTGG TCGTCCGTAC AATCTAGTAG TTCGCTGCAT AAAGCAAGCT CGTGACCTTC 
AAAGGATTTT GTCTTTCAGC CCAAGCAAAC AGCATAGGAT AGGATAACTC CCATGGCAGC
AAACGGTGGA AGCAGGCCGA ACTTTGCCGC TATGGAAATG GAAAGCAACG GTAGGTCGTC
TCGGCGCGAC ATGAAACCCA TGCCGGTTCA ATCTTCTTCC GGTTCGACGA GTCATCCACT
AGATCAGCTA TGTATGTTCC TAAAGCTGCA TTTGGAGTAC TATCCGCGCC TTGCGACAGC
TCTAGTCCTA TCCATCATCG GACTACTTTT CTACATGTTC GTAAAGTCTT TTCAAACGCC
TATGTATAGG AACCGACTCT CGCACGATTA TACCAAAATC GAATTGGACT ACAACTTCAA
AGCATCGCAG TTAGATCATT GGTGTTTGTT TGTAAGTTGA TAAATGGAGG GACGAAAAGG
TAGGTCGTGA AAGGTCTCCT TAATCTTGCT GACCCATTTT CTCTCGATTT TCAGGGTGGA
GACGACGCCT GTCAATGCGA AGACTTTACC GAAACGATCT CGCGAGAGGA ACAACAAGGC
TGGCTACCCG CTCATGAAGC CAACAAAAAA CGTATTCAAC AAAATGTTGA CTACGATGTG
GTTTTCTTTG GGGACGAGAC GACGGAAGAA TGGAACGGCT ACTGGTATAA CAAACCAAGC
CAGGATGGCC ACTTAATTCG CAAATACTGG AATGAAACCT TTACCAGCGC CGGTGGAGGT
GAATTGGAAG GTCTGGCCTT GGGTATTGCC GGTGATTCAA CAGCCAATTT ATTGTGGAGA
ATGCAACACG GCGAACTGCC GCAGTCGCTG AACTCCAAGG TTTTCTGGCT ACTTATTGGA
ACAAACGATT TATCCCGGGG TGGCTGCTCT GAAGAAGCGA CTGTCTTGGG TATTCTCCGG
ACGGTAGAAG AGATTGCCTT CAGCAACCCC GGTTCGGTGG TGGTCATTCA GGGCATTTTG
CCACGATCGT CGCGGCAAAA TGGGAGCCTG GAGAAAGTTG GAGGTCGAGC GCATCATCTC
TTTGAATGGC ATCATTCAGA GACTTTTAAG GCTAATCAGG CTCGCCGCCA CTTCTTACTC
TGGCCTTCTA TTCAGAAAAT CAATCAGCAA TTGGCTACAT TCTGCAAAGA ACACGACCAC
CTAGTTTACT TCGATGTCGA CTCGTTGTTT CTGGGAACCC TGGGCAACGA CCACTATACG
GCAAAGTCGC AACAGATTGT TTCGGATCTT ATGCCGGACT ATGTTCATCT TTCGGTGGAG
GGACACCGAG TCCTGGGGAA TGCCATTTTG CGTGAGCTAC AGCGGATCAT CTTCGAAGAT
GACGAACGCA ACGATGTCGA ATAAGTTGAT GATGAGAAGG TTTGCAGTCG TATTTTAGTG
TTCTTCTATG GGAGAAGAAT ATGCTTTTTG TATCATACAT AGTTGTTCCG TAGACCGCCT
TTCTGTTAAT
 
Protein sequence
MAANGGSRPN FAAMEMESNG RSSRRDMKPM PVQSSSGSTS HPLDQLCMFL KLHLEYYPRL 
ATALVLSIIG LLFYMFVKSF QTPMYRNRLS HDYTKIELDY NFKASQLDHW CLFGGDDACQ
CEDFTETISR EEQQGWLPAH EANKKRIQQN VDYDVVFFGD ETTEEWNGYW YNKPSQDGHL
IRKYWNETFT SAGGGELEGL ALGIAGDSTA NLLWRMQHGE LPQSLNSKVF WLLIGTNDLS
RGGCSEEATV LGILRTVEEI AFSNPGSVVV IQGILPRSSR QNGSLEKVGG RAHHLFEWHH
SETFKANQAR RHFLLWPSIQ KINQQLATFC KEHDHLVYFD VDSLFLGTLG NDHYTAKSQQ
IVSDLMPDYV HLSVEGHRVL GNAILRELQR IIFEDDERND VE