| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_29223 |
|---|
| Symbol | |
|---|
| ID | 7203003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011683 |
|---|
| Strand | - |
|---|
| Start bp | 679358 |
|---|
| End bp | 681445 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002182441 |
|---|
| Protein GI | 219124292 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TCTCCGGGGA GTTTAGTGGG CAAAATTGAC GATCTTGCCA GACCACTCGA CGTGCAAATC
TTCCTTCATT TGGTTGGTAC GACTGAGTTG GGTTTATTAA AGGCTTTACC GACACAACGA
GAGCTACTCG TGCGGGGGAA GCCTGCCTTT CTTGACGGAC GGATCCAGTA TACGTGACAA
AATCTTGGAG GATCTCGTCG TAGAAGTCCT ACGAGAAGCT ACACGACAAA ACGTGGACCT
CGAGTGCCGT GCCGAAGAAA GCCTGCCGAT TTTCGTCATA TCTAACCAGC CCCTTCCTCA
GGAACAACGG TTCATTTACT GGTTGGAGCA AGCTTTGGAG GTTCATTCTA GTTTCTCACT
CCACGAAACG CTACCGTTTC GAGAAGCCGT TTCGAGAAGA ATTTATCCGC ACGAAGAACG
AACGCTGTCG TGAATTGTCG CATTTGGATC GTTGCTATTC CCAAACTTTG GCTTGCTTTT
CATGTCCACA TCGTTCTCGG CGGCTCTCAC ATCTTCAACG ACGACAGCGA TGGAGGCTTC
GGCAACTAGT CCCCGCAAAG GACACGCGAA TAGTATGGTG GAAGCATCCG GTTCCTCGGC
GACATCCGCT CCGGCAGCAA ACGCGCAAAG TGACAACACC CGTAGCGGTC CCTTGTCGGA
ACAGCAGCAA ACAGCATCCA CCGCCGCGAG TAACAATATA TCCTATTCAG CGGAGCGTAT
TATCGGAAAC GGGTCGTTTG GTGTAGTTTT CGAAGCAAAA GTAGTGGGGA CCGGGGAAGT
CGTTGCGATC AAAAAGGTTT TACAGGATAA GAGGTTCAAG AATCGTGAAC TCCAGATTAT
GAAACAGCTA GTCAGAGATC CTCATACCAA TATCGTAGGG CTTAAGCATT GCTTTTACTC
ACAGGTACGT TCGAACTGAG GAGAAATAAC TCTTCATCAT CTCTCCATTA TGTGCTCAAC
CAATTTTCCT TCCACAGGGC GAAAAACCGG ACGAGCTGTA CTTGAATTTG GTGCTTGAAT
TTGTACCGGA AACCGTATAC TCTATCAGTC GAAGACATCA GAAGCATTCG ATGCAACTGC
CACTGATGAG CGTCAAACTC TATCTTTACC AGCTCAGCAG GGCCCTAGCT CATATCCATT
GTTTGGGAAT TTGTCACCGA GATATCAAAC CGCAGAACTT ATTGGTGCAC CCGCAAACTC
AGCAACTAAA ATTATGTGAT TTTGGTTCTG CCAAGGCGCT CATTCAGGGC GAACCTAACG
TATCCTATAT TTGCTCACGA TACTACCGTG CACCGGAACT GATTTTTGGA TCGACGGATT
ACACCACCGC GATTGACATT TGGTCGCAGG GTTGCGTGGG CGCAGAATTA CTGCTTGGAC
AACCCCTATT TCCGGGAGAT TCGGGTGTCG ACCAGCTCGT AGAAATCATC AAGGTACTGG
GGACACCAAC TAAGGAGGAG ATACGATCCA TGAATTCGAA CTATATGGAA TTCAAATTTC
CACAAATCAA AGGTTGTCAG TGGAAAAAGA TTTTTCGTAA CAAGACACCG CAGGACGCCA
TGGACTTTAT CGCGGCGACC TTGGCTTACA CGCCGTCGGA ACGGATCTTG CCGCTCGAAG
GATGCGCGCA CGAATTTTTT GACGAACTGC GACAGGAGTC GACTGTACTG TCAAACGGAG
GCGGCAAGCT CCCGCCTCTA TTTGATTTTA CAACTCACGA GTTAGCAAAA TCGCCCCAAC
TTTTGACAAA GTTAATACCG CCGCATTTGA AAGGATCGTT CGAGATTCCA TCGGTAGAAA
CTGATGACGT CGCTTCCGCA ACAACTCCTA TACCATCGTC ACTGGATCGG AAGCAGGAAG
CTACCCTTCG ATGAGCTTAA TGCACAACAA AAAGACATAA TCAAGCCGTA CCGTACGCAC
TATCTATGTC CATGTCCACT GGCGCTCGTC TGGGCATTGG TCAGCGTGCG GATACGAAGA
GGGACGGTAG AGTCGTCCTT TTCCGTGTCG GCATGGTTTT CCACGAGCAA TCCCACCCAC
AAATTTCCCA AACTTAACGG AAAAACTAAT TCCTTCTGTT TTCCTATA
|
|---|
| Protein sequence | MSTSFSAALT SSTTTAMEAS ATSPRKGHAN SMVEASGSSA TSAPAANAQS DNTRSGPLSE
QQQTASTAAS NNISYSAERI IGNGSFGVVF EAKVVGTGEV VAIKKVLQDK RFKNRELQIM
KQLVRDPHTN IVGLKHCFYS QGEKPDELYL NLVLEFVPET VYSISRRHQK HSMQLPLMSV
KLYLYQLSRA LAHIHCLGIC HRDIKPQNLL VHPQTQQLKL CDFGSAKALI QGEPNVSYIC
SRYYRAPELI FGSTDYTTAI DIWSQGCVGA ELLLGQPLFP GDSGVDQLVE IIKVLGTPTK
EEIRSMNSNY MEFKFPQIKG CQWKKIFRNK TPQDAMDFIA ATLAYTPSER ILPLEGCAHE
FFDELRQEST VLSNGGGKLP PLFDFTTHEL AKSPQLLTKL IPPHLKGSFE IPSVETDDVA
SATTPIPSSL DRKQEATLR
|
|---|
| |