Gene PHATRDRAFT_14457 details

Gene Information

• Locus tag: PHATRDRAFT_14457
• Symbol: RPA1
• ID: 7203231
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011683
• Strand: +
• Start bp: 631178
• End bp: 633225
• Gene Length: 2048 bp
• Protein Length: 606 aa
• GC content: 56%
• Product: replication protein a large 70 kD subunit
• Protein accession: XP_002182265
• Protein GI: 219123923

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGGCA ACGGCGGAGG ACCTTCCTTC AGTCCCATCC TCCAAGTCCT CGATACCAAG 
CAAGTTCCGG GACCCCAAGG AAGTGTGCGC TATCGGGTAC GTCGAGAGTG TGTGGGGTGG 
TTGAGTTGAT GTAATGGTGT TCCTAGTTGC GGGTATCACC AACGGGGTCG CCTCGAGATC 
TCTGCTTGTA CTCACAATAC CACAACACAC ACTCTCACTT GCAACACACT CACTCACTTA 
CCATATATTT TCTACAGATT GTCCTGTCCG ACGGCAAGCA CTACATTCAA GGCATGCTCG 
CGACCCAACT GAACCACATG ATTGCTACTA ATCTCATTGG TGCCAACACG ATAGTGCAAG 
TCGAGCAATT CATGTCCAAT CGCGTCAAGG ACCGCACCGT CATTATTCTC CTCAACGTGC 
ACGCCCTCCG CAACGAACCC TCCCGCATTG GGGACCCGCA GGACATTGAA AAGGCGCAAA 
TTGCAACCCC GGGAGTCGCC CCGTCCCTCA CGAGCGCACC AGCAGCAGCA GCAGTACCGG 
CACAACCTCT CTACAACAAG ACCAATTACG CCACCGGAAG CTCCGTCCCA CCCGTCAAGA 
CCGGGAGTCC CAATCCCTAC GGAGGTCCTT CCCGAAACCC ACACCACGCT TCCCCCGTGC 
GGTCCTCCCA CGCACCGATT GTACGCGATA CCGTGAACGG AACACCCATC ACCAACATTA 
GCAATCTCAA CATGTACGCC AACAAGTGGA CCATTCAAGC CCGCGTTACT TCCAAATCAG 
ATATTCGCAC CTGGTCCAAC GCCAAAGGCG AAGGTAGCCT CTTTTCCGTC GAACTACTCG 
ATCAAACGCA GGATGTCCGG GCTACCTTCT TCAAGGAAGC CGTCGACAAG TTCTACAGCT 
TTTTGCAGAT CGGATCCGTC TACACATTTT CCGGTGGACG TCTCAAGGTC GCCAACGCAC 
AGTACAATAC CTGCCAGAGC AATTTCGAAA TCACTTTTGA TCAGAACTCC GAAATACACC 
TCGCCAACGA CGACGGAAAT ATACAACGGC AGCACTACGA ATTCATCGAC AGCATCGCCG 
GTCTGGAGCG TACCGAACCC AACACCATGG TGGATCTGCT CGCCGTCGTA CAGGCGGTCG 
GAGAAGTCGC CACGATTGTC AGCAAAAAGT CGGGCCAGGA GCTCACCAAG TGCGATTTGA 
CCCTCATCGA CACCTCCGCC ACGCAAATCA CCCTCACTCT CTGGGGAGAC AAGGCTGCCT 
CGGCACTCAC CGACTACAAC CAACAACCCG TCGTCGCGAT CCGGCGCGCA CGCGTCAGCG 
ACTACGGCGG ACGTAGTCTC TCCCTCTCCG GATCCATCGA AACCAATCCG GACATTCCCC 
AAACCGCGCC CTTGCAAACG TGGTGGCGGA CCCAAACCGC CAACGGCGGT GTCACCGGGA 
AATCTCTATC CGCCACCCGC GGCGGAGCCG GCGTGATGGA AAGTTTGGAA CAACGACAAA 
CCATTGCCGA CATCAAGAAT AACAATCTGG GTTACGCCGG CGACAAGCCC GATTGGCTGA 
CGTTCAAGGC CACCGTTTCC TTTTTGAAAA AAGACAAGGA GGGGGGTTCG TGGTACCCAG 
CCTGTGCCAA CGCCGGGGAA CCCTGCAAAA ACCGGTACAA GGTCACGCAA ACGACCGACG 
GCAACTGGTA CTGCGACAAG TGTCAAGGCT CGTTTCCCAC CTGCGTCCGG CGCTGGATCT 
TTTCCGGGGT CGTCGAAGAC GACACCAGCT CTACCTGGGT CAGTTTCTTC AACGAACAGG 
CCGAAACACT GCTCGCCGGC GCCACGGCCG ACCAAGTCTA CGCCGAGACC TATCAGGATC 
AGCAAGATCA GGACGCCTAC GACTCGTACT TTGCCAAGGC CAACCACACG GAATGGATCT 
TCAAATGCAA GGTCAAGAAC GAAATGGTCA ACGAAGAATC CCGCGTCAAA ACCAGCGTCG 
TGGCCATGCA ACCCGTCGAC TTTGCCAAGG AATCCCGCGA TCTCCTGTCG GCCCTGGCCA 
AGTTTTAA 

 

Protein sequence

MTGNGGGPSF SPILQVLDTK QVPGPQGSVR YRIVLSDGKH YIQGMLATQL NHMIATNLIG 
ANTIVQVEQF MSNRVKDRTV IILLNVHALR NEPSRIGDPQ DIEKAQIATP GTNYATGSSV 
PPVKTGSPNP YGGPSRNPHH ASPVRSSHAP IVRDTVNGTP ITNISNLNMY ANKWTIQARV 
TSKSDIRTWS NAKGEGSLFS VELLDQTQDV RATFFKEAVD KFYSFLQIGS VYTFSGGRLK 
VANAQYNTCQ SNFEITFDQN SEIHLANDDG NIQRQHYEFI DSIAGLERTE PNTMVDLLAV 
VQAVGEVATI VSKKSGQELT KCDLTLIDTS ATQITLTLWG DKAASALTDY NQQPVVAIRR 
ARVSDYGGRS LSLSGSIETN PDIPQTAPLQ TWWRTQTANG GVTGKSLSAT RGGAGVMESL 
EQRQTIADIK NNNLGYAGDK PDWLTFKATV SFLKKDKEGG SWYPACANAG EPCKNRYKVT 
QTTDGNWYCD KCQGSFPTCV RRWIFSGVVE DDTSSTWVSF FNEQAETLLA GATADQVYAE 
TYQDQQDQDA YDSYFAKANH TEWIFKCKVK NEMVNEESRV KTSVVAMQPV DFAKESRDLL 
SALAKF