Gene PHATRDRAFT_47670 details

Gene Information

• Locus tag: PHATRDRAFT_47670
• Symbol: VTE1
• ID: 7202869
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011682
• Strand: +
• Start bp: 478187
• End bp: 480450
• Gene Length: 2264 bp
• Protein Length: 622 aa
• GC content: 49%
• Product: tocopherol cyclase
• Protein accession: XP_002181915
• Protein GI: 219123195

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.233901
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TAACATTTGA CCATGGTGCT GCTGCAACGT TCCGTCGTGG CGATCGCCCT TTGCGGAGTG 
ATTGCCGTGG AAGGCTTCTA CCTTCCCGGT GCCAATTCTC AAGCCTTCGC GGATAATGAC 
CCGTAAGTAT TCCGTGTACA CTTTCATGGG CGAGAGAGAG CGACAGTCCG CACCCCCAAG 
CACGAATCGT ATTGCTTCGT TGCGCTCCTG CCCGAATTTA CACAAAGGCG GGATGATTAT 
GCTTTCTCTA TGACTTTTCC TATTTCCTTG ACTGACCCAT TCTCTCCTTT GCTCACGTTA 
ATTGCTTGCT GTTATACAGC GTCAAGCTCA AGGTGAATAA GCTAACTTCG ACGAAAACGC 
TCATGCCCAT TGACTACTAC CGCCTGCCCT TTTGCATTCC GGAGGGAGGA GCCAAGATGG 
ACAATGAGAA TCTAGGAGAG TTCCTCTCCG GAGATCGCAT TGAGTCCTCG CCGTATGTTC 
TCCAAATGAA GAACGACATG TACTGTGAAC AGCTCTGTAT CGCCAACCTT GGACGGGGCG 
AACAACGCGG CGTTCAGCCC AACAAGTTCG TCAAGGCCAT CCGCAAAAAC TACCACAATA 
ACTGGATCGT CGACAACCTC AGTTCCGCCA GTAAAGCCGA AAACGATAAA GAAGTGACTA 
CGAGATACTG GCAGGGCTTT CCCGTTGGCT TTATTGGCAA TGATGGCCAA GCCTACGTGA 
ACAACCACGT CAATATTGAA ATCATGTACC ATCCATCGGA TACGGAAACG GACAAGTACC 
GCATCGTGCG ATTCGTGGTG GAACCCTTTT CCATCAAGCA TGATTCCGAA CCGGTAGTGG 
ACGATACAAA CGATGTTGAC GACACACACG TTCTAACGCG GGTCGCCAAG ATCAACAATC 
CTATTGATTC CTGTGCCCCT AATGCAAAGA CTCACACCAC CTACGATATG ATTACCCAGT 
CGGGTCGGGA ACCCCAACGC GCTTCTGGTC AAGTCCTCTT TACCTACGAT GTTAAATGGG 
AACTCAATAC CGAGGTCAAA TGGGCATCGC GTTGGGATAT TTACCTCAAC ATGGACGACG 
CTGTTCCCGC CAAAGTACAC TGGCTGAGTA TTGCAAATTC TCTTGTCATT GTCTTTGTGC 
TCAGCGCCAT GATTGCTGCT ATTTTGATCC GCAACTTGCG ACGAGACATT TCTCGGTACA 
ATCGTCTCGC GACGGACGAA GAGAAAGCGG AGGATTTGGA AGAATACGGC TGGAAGTTGG 
TGCACGCCGA CGTTTTTCGG CCACCCACAT TCTCGCCGCT ATTGTTGGCG GTTGCTTGCG 
GCACTGGAGC TCAACTGCTC GCCATGACCT TTTTGACGAT TGCGTTTTCT GCGATGGGAT 
TTATGAGCCC AGCGAGACGC GGACACTTAC TCATGGCGGA ATTGCTGTTG TTTGTCTGCA 
TGGGTGGTTT GGCGGGATAC GTTACGGCGC GCTTATACAA AACCTTCAAG GGCAAATCCT 
GGCAAAAGGC GACGACTCTC ACGGCCGTTG GCTTTCCCGG AATATGCTTT GGTGTATTCA 
TAATCATGAA TGTAATTGCT CTTGCGAAGC AGTCTACCGA CGCTGTACCC TTTGTGACCA 
TGTTGATTCT CGTGGTCTTG TGGTTCGGTA TTTCTACACC GCTCGTCTTC TTCGGCGCCT 
ATTTTGGTTA CAAGCACGAG GCTATTGAGT TTCCCGTCAA TACCAGCTCG ATCCCCCGAC 
AGATTCCCGA TCAACCCTGG TTTATGGGTA TTCCATTTAC AATGGCGATT GGTGGTATCT 
TGCCTTTTGG TTCGTGCTTT GTCGAGCTCT ACTACATTCT TGCCTCAGTG TGGATGGACT 
ACTACTACTA CGTCTTTGGC TTTCTGTTCC TGGTCTTTTT GATTCTCATC ATTACCTGCG 
CCGAAATTAC TCTCCTCTTC ACCTACTTCC AGCTCTGCAG TGAAGATTAC CACTGGTGGT 
GGCGCTCGTT CGCAAATGCC GGATCGACTT CGGCGTACGT CTTTTTATAT TCCATCTTCT 
ACTTTCAGCA GCTCGAGGCC AACTTGTTGG CAACTTACGT ACTCTACTTT GGTTACATGG 
CACTGTCCTG TTTGGGACTA TTCTGTATGA TGGGTTTTGT GGGAATGTCG ACCTCACTGT 
GGTTTAACAA GGTCATTTTT TCGTCCATCA AAATCGACTA GATCGGTAAC TCAAGAGTAC 
ACACTTAGCA TTGCATTATC TCCAACATAG CCTTGAATGT CGTG 

 

Protein sequence

FYLPGANSQA FADNDPVKLK VNKLTSTKTL MPIDYYRLPF CIPEGGAKMD NENLGEFLSG 
DRIESSPYVL QMKNDMYCEQ LCIANLGRGE QRGVQPNKFV KAIRKNYHNN WIVDNLSSAS 
KAENDKEVTT RYWQGFPVGF IGNDGQAYVN NHVNIEIMYH PSDTETDKYR IVRFVVEPFS 
IKHDSEPVVD DTNDVDDTHT HTTYDMITQS GREPQRASGQ VLFTYDVKWE LNTEVKWASR 
WDIYLNMDDA VPAKVHWLSI ANSLVIVFVL SAMIAAILIR NLRRDISRYN RLATDEEKAE 
DLEEYGWKLV HADVFRPPTF SPLLLAVACG TGAQLLAMTF LTIAFSAMGF MSPARRGHLL 
MAELLLFVCM GGLAGYVTAR LYKTFKGKSW QKATTLTAVG FPGICFGVFI IMNVIALAKQ 
STDAVPFVTM LILVVLWFGI STPLVFFGAY FGYKHEAIEF PVNTSSIPRQ IPDQPWFMGI 
PFTMAIGGIL PFGSCFVELY YILASVWMDY YYYVFGFLFL VFLILIITCA EITLLFTYFQ 
LCSEDYHWWW RSFANAGSTS AYVFLYSIFY FQQLEANLLA TYVLYFGYMA LSCLGLFCMM 
GFVGMSTSLW FNKVIFSSIK ID