| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_47404 |
|---|
| Symbol | RAD4 |
|---|
| ID | 7202544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011681 |
|---|
| Strand | + |
|---|
| Start bp | 542539 |
|---|
| End bp | 545112 |
|---|
| Gene Length | 2574 bp |
|---|
| Protein Length | 857 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | xeroderma pigmentosum group |
|---|
| Protein accession | XP_002181579 |
|---|
| Protein GI | 219122495 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.330111 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTG CGTGGAATCC TTCGTCGGAC GAGGAAGATT TGGACGAATG GACCAGGCGG
GAAGGGTTCC AATGCGACAC GAGCATCCTT TCTGCTGCCG ACCCGGTCAA TCGTGACGAC
ATCCGGGAGA ATGCTTCAAC ATTTGTTTCA ACGGATGCGT GGGAACAGAT GGGACGTTCT
CCTGCGGGGC TTCCAACGTC GCTGACTCTG GATAGCAGTG ACGAAGAAGA AGAGGTTGAC
TGGGAAGACG TTGCCGACGG GAACGGGGAC TTGAAACCCG CAGCCGTCAC TGCTTCCCAT
CAGCCCGTTA CTACTAACAA ATCTGTAATG ATTGATTTGA GCAAAAAGAC GCCAGATGTT
TCACCAGTGA TAGAGTCCAA AAGGAAGGCA AGGACCCGCA AAAGGTTTCG CAACGAATCT
CTACCACAGT ATCTACAGAC GCTTCTACGG GATCTGCACC GAACCAGTTT ACTTTTTCTA
GCATCGCGAG CCATCTACCT TTCCAAACTC ACGACTAATG ATGAATTTCT TGCAGTTGCG
CACAGTCTTG TTCCCTTGAG TCTCTTACAC CAGCTCACGT CCACCGATAC TGTGCACAGC
TCGCGGGAAA CAATCCCACC GACACGGCAT GATTTGCGCA TGTTTTGCGA TTGGTATTTT
GCGTTCGTAC ACAACGTGGA CAGTCGTAGG AGACAGCAAT TAGCAGCTCA TCATGCGGCG
GGTGCACCGA CTGCTACCAT ACGACGGGTA CGTCAACCAC GGGGTAAGGC GTCGAAAGCA
CACTCGAACC AAGTAAGACA TGTTGACGCA AATCCGATAA AAATGTTGTC GTCATCAAAC
GGAGACGACC CATCTGATTG TTCTCTACTA GAATATGCGG CGTATGTAGC GCTTTCTGAT
CATGGTGATC CACAAGCTCA AACAGTGTGG AGAAAACGAG ATGTGGAATT CTCGGAACGT
CATCCAACGC TACTGTTGTT AGCCATTGCT CGATCACTGG GTTGGCGAGC ACGGCTGGTA
CAGGCAATGA ATCCCATTCG ATCCGACTTG GATGTTGCGC ATCCAATCTT GACCTGCAGT
CAAAATATTT TTGTCACTCT TTCGCACAAT CTTCAACATC AAAGTCCGAG ATCTGCCGCG
TCCAAGCGCA AGAGAGCATC TACTACTCCA GAATTACAGA CAGAGGTGAC GCCAGTCGGT
ATGTCGTCTT CTATCTCCCA GAGAAATGTC ACGGCGGATT GGGTTGAAAT TCTGATCCAG
GATGGGTCGA CCAGGAGTGG TTTTCGTTGG ATTCATGTCG ATCCGGTCCA GGAACTCATC
AATAGACCGG ATCAAATCGA AAGGCGACTG GCTGCCATAT TTTCATTGGC TGAAGGGCAG
GCAACACGAA AACGTGTAGC GTTGGGGTAC GCTGTTGCAG TAGAGCACGC CGTAGACGGG
GTAGCACCCG TAGTAGAATC AGCCACAGGA CAATTCCAGA TAACGGATGT GACTCCCAGA
TACGCGTCAA GCTGGGTTGA GTCGCTGCGT GTTCGAGGAC TGGTGCGTGG AAAGAATTCT
TTGACAGAAA AAAACCTGAA AAAAAGCTGG TGGTCGATAA CCTTGGCGAA ACTGAATACA
TCTTGTGTTT CCATATACCC AGAGTTGGAC CAAAGGGCTG GTGGTAGTCC CGCTGACGCA
ATTGTTGTAG ACCAGGATTC GGGAGACAAC CTGTCGTCTT TGGTCAGCTC TAGACCAAAG
GTGATGGCAA CAATGGAAGA CCATGAATCT GAAGAGTTAC AGCAGTCAGT TGAGAACGAG
GCAATTCCCA CCTCCAAGGC TGCCTTCAAG ACTCACCCTA TTTATGCTCT TCAATCTGTG
CTTAATTCGA CAGACGTACT CGCACCGGAT GCTGGCCTTC GCATATGTGG TGTTTTCAAA
GGAGAGCTTA TTTACCGACG TAGCGATGTT AGTTCTGCGC TTCCGGAGAA GAAATGGCTT
TACCAAGATC GCAAGGTCCG TCAAGGCGAG CAGCCGATCA AGCGTGTGAA GGCACGCAGA
AAGACAACCC CGACCAAAGC ATTTCAAGCA TTGACTTCAT ACGGGGTAGG GTCGTCCAAT
GACGGTAGTG AGGAAAGACG AGCTGCCGAT ATTGCTCAAG GCTCGCAGCC TCTCGATGAC
GGGATGGTGG ATCTTTTTGC GATTTGGCAG ACAGATCCAT GGTCTCCTAT CCCGATTGGC
CCCAACGATG CCATTCCGGT AAACATTTAT AACAACATCG AACTGGAGTT GCTAAATCCT
GGGCTCGTAC ACATCGACCA ACGTGGCGCA TCGATTGTGG CTAAGAAACT CGGGATTTCC
TACGCCCCTT GTTTGCTAGG CTTTGAAGGT CACGGTAGTA ACCGGACTCC TACCATACGA
GGGATTGTCG TGCACGCTCA TAACGAACAA ATAGTCCGCG AAGCCCATGT TGAAGCTACG
TCGCATCAGA TGCAAGTCGA CGAAGACAAT CGTCGACATG CGGCGTTACT TCGATGGAAA
AAGCTAATGG TCGGAATTCT GACGAAAGAT CGCTTAGAGC GTGACTACAC ATAA
|
|---|
| Protein sequence | MSFAWNPSSD EEDLDEWTRR EGFQCDTSIL SAADPVNRDD IRENASTFVS TDAWEQMGRS
PAGLPTSLTL DSSDEEEEVD WEDVADGNGD LKPAAVTASH QPVTTNKSVM IDLSKKTPDV
SPVIESKRKA RTRKRFRNES LPQYLQTLLR DLHRTSLLFL ASRAIYLSKL TTNDEFLAVA
HSLVPLSLLH QLTSTDTVHS SRETIPPTRH DLRMFCDWYF AFVHNVDSRR RQQLAAHHAA
GAPTATIRRV RQPRGKASKA HSNQVRHVDA NPIKMLSSSN GDDPSDCSLL EYAAYVALSD
HGDPQAQTVW RKRDVEFSER HPTLLLLAIA RSLGWRARLV QAMNPIRSDL DVAHPILTCS
QNIFVTLSHN LQHQSPRSAA SKRKRASTTP ELQTEVTPVG MSSSISQRNV TADWVEILIQ
DGSTRSGFRW IHVDPVQELI NRPDQIERRL AAIFSLAEGQ ATRKRVALGY AVAVEHAVDG
VAPVVESATG QFQITDVTPR YASSWVESLR VRGLVRGKNS LTEKNLKKSW WSITLAKLNT
SCVSIYPELD QRAGGSPADA IVVDQDSGDN LSSLVSSRPK VMATMEDHES EELQQSVENE
AIPTSKAAFK THPIYALQSV LNSTDVLAPD AGLRICGVFK GELIYRRSDV SSALPEKKWL
YQDRKVRQGE QPIKRVKARR KTTPTKAFQA LTSYGVGSSN DGSEERRAAD IAQGSQPLDD
GMVDLFAIWQ TDPWSPIPIG PNDAIPVNIY NNIELELLNP GLVHIDQRGA SIVAKKLGIS
YAPCLLGFEG HGSNRTPTIR GIVVHAHNEQ IVREAHVEAT SHQMQVDEDN RRHAALLRWK
KLMVGILTKD RLERDYT
|
|---|
| |