| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_47297 |
|---|
| Symbol | |
|---|
| ID | 7202378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011681 |
|---|
| Strand | - |
|---|
| Start bp | 220761 |
|---|
| End bp | 222390 |
|---|
| Gene Length | 1630 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002181682 |
|---|
| Protein GI | 219122707 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCGCGTCGAA CGAAACTCAC TGTCAACACT TTTTGGCAGT GCGTTTGTTC CTACAATCGT
ATCCAAGGCT GCAATCTATA TTACATATTC GTTACAGAAC CTCAGTATTC GATCAGAGCA
ATACTCCAGC CTCCCTGGAT CCCTGAATTC AACCATTTTC TACGTTGTTG TCTTGGCTTT
TGGTTCGAAG AATTGCATCG TAGAATTTCT ACGTGCTGTC TACGTAAAGT CATATATCGC
ATCACAGTCA ACTCCGCTCT GGCAGCGTTG ACCAGGAGTG GGAAAAGACC GACCTCATTC
CATGGCTACC GCACAAGTTT GGATGGTCAA CGACACCAAT TGCACCATGA ATCCTTCCTC
TTTGCCTATA GCGGACGAGT TAGCTCCTCA CAAAGACAGC GACGCCACAG CTCACAATAT
TGCTCACGAC TTTGCCCAAA CCCTAACCAC GCCGGCTAGT ACTGGGCGCC CAAAGACTGC
GCCGATATGT ATGGATGAAA ACCTCCGTAG TCAAGCCATG ACTACGGAGG AGCTTGCTGC
TTTTGCTTTT ACAGCACCTA TGAAAAGCAA CGTTTCTCTA TTTCCCGTGG TCCCTGTGTC
ATCAAACTCC TCCGAATGCA CCCGTGAAAG TGACCTGGAT GTACTTTCCG ATCACGAGCA
TTTTTCGAAA GGAGTTTCGG ATCAAAGTGT CGCGTCCACA CCGGTGCGGA TGGACCGGGC
CTTGACCGAT GAGCTCAACG CCAAAGTTTC ATTGCGAAAA ACCTCCCGCC AAGGCCGCTC
TACGCAGCGT TGGGCTGAAG AAGAGGACAC GGCATCGGGC GCCATTCGAC TCGTCACTGG
CTGTGTTCCG ATTCTCAAAG ACGGCAAAAT ATTATTCGCG TCGGCTTCAC GCAAGTCCGA
GTGGATTCTT CCCAAGGGTG GATGGGAAGA GGACGAAACC ATGCCGGAAT CGGCAGTTCG
GGAGTGTTTC GAAGAAGCGG GGGTACTCGG TGTTTTGGGG CCACCTTTGC GAACGATCCA
GTACGAAACC CGTAAAGCAA AAAAACGGCG ATTGGAACTT GAGAACTCCA ATCTTGCCCC
ATTACGATCC ACCAAAGCCA AGATGACTGA TACTTGTGGT AGTGTTTTGT CTGACATCGA
AGGAGCTATC ACTGACGGAA CGGCATTGCC ACCCGCACCA GTCGTGACCG CACCTACATT
AATGCTGTCC GAAGAAGCCA TGTCCAGAAT ACTCGGGCAT CCCTCCAAGC CCGGTAGGCC
AACGACAAAA GCTGCGCCTG TACACCCCAG TGACGACACA GTGTCAATTG CATCTACCAC
GCTGTCGGCA ACGTATTCGC AGGTGCGCAT GACACTGTTT CCGCTTTACG TGACTAGTGT
GATGGATGTT TGGCCCGAGT CGGGGCGCTT CCGGAAAGCG GTCTCGATTG ACCAGGCTTT
GCAATTGCTC GAAACTCGAC CGGAACTACA AGCGGCCGTG CGCGAAGTAC AAGAGCGGAG
TTTACATGAG GTGTCCAACC TATCGTCCCT TCCGCCAGCA TCGTTCCGAT GACAATGGCA
GCAAGTAGCC GAACCTCGAA AGGAATCAAT TCCGCTGCAC AATGAAAATA GATTTACACG
AACAAGGTAC
|
|---|
| Protein sequence | MATAQVWMVN DTNCTMNPSS LPIADELAPH KDSDATAHNI AHDFAQTLTT PASTGRPKTA
PICMDENLRS QAMTTEELAA FAFTAPMKSN VSLFPVVPVS SNSSECTRES DLDVLSDHEH
FSKGVSDQSV ASTPVRMDRA LTDELNAKVS LRKTSRQGRS TQRWAEEEDT ASGAIRLVTG
CVPILKDGKI LFASASRKSE WILPKGGWEE DETMPESAVR ECFEEAGVLG VLGPPLRTIQ
YETRKAKKRR LELENSNLAP LRSTKAKMTD TCGSVLSDIE GAITDGTALP PAPVVTAPTL
MLSEEAMSRI LGHPSKPGRP TTKAAPVHPS DDTVSIASTT LSATYSQVRM TLFPLYVTSV
MDVWPESGRF RKAVSIDQAL QLLETRPELQ AAVREVQERS LHEVSNLSSL PPASFR
|
|---|
| |