Gene PHATRDRAFT_47250 details

Gene Information

• Locus tag: PHATRDRAFT_47250
• ID: 7202303
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011681
• Strand: +
• Start bp: 81550
• End bp: 83585
• Gene Length: 2036 bp
• Protein Length: 574 aa
• GC content: 53%
• Product: predicted protein
• Protein accession: XP_002181477
• Protein GI: 219122283

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.110596
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATATT GGAGGGACGA TCGACGAACG ACACCCAACA AACGCAAATT ACGGTACGGT 
ACGGAAAAAC CAATCTCTAG CTAGCTAGCT AGCTCTAGTA GTAGTAGGGG AATATGCGAG 
GTGAGTGTCA AAGTGTCAAG CCTGGTTTTT GGCAAATAGG TACATGTGCG AGTGCCACCC 
TCGGCCCCCA CTGAATAGTA CGTTCGTCCA GGGTTCCGCT TTCGCAGTAA ATGGCCACCT 
GCTGCTCACC TTCCAATGGA CAACTTACTT ACATACTTAC AGATACTCTT ATTATCCGGA 
GCAAAGAATA GCAGCGACGC ACTCCGCACA CGACCTTTCC ATCAACAACG TGGCGATGAC 
TCGTACCCTC CGGAGAGGAA ATCAGCTTTT CTCCGTAGCC GCGGTGGTCT GGGCCTACGC 
GTACGTCAAC TGGAATAGTA ATCCCTACAA GTTGTTGAGG ACGGCCGAGG CGTTGGCGCC 
TCCCATCAGC TACAGACGGA CAGTGTCACC GCTGGGCTAC ACGTATCGGA CGGATGCGTC 
TCGACGAATA CAGTTCTTTC CGTTGACTGC GACTAGAAGC ACCGGTTCCG CCGTCGACAC 
CGTCAAAAAT GGCGACCAAG ACTCTTCGAT TAGCGTACCG ACCGGCAAAC GTTTCGTGGC 
GCGTCAACTA GCCTCGCTCC CCCAACGCGC CGTGCGCATC TATTCCGAAT ACGTCAGTCG 
ACTATGGAGA GAAACCAATC CCGAAGCTCG TCAAATTATA TCCCAAGACA AGGCCGCTAC 
CGCTATTCGT CGGGTGCAGC ATCTGATCCG AGGCGAGCAG CTGGCGGGGG TCGTCTCGTG 
GGAAGAAAAG AACGGATTGG CACTTGCGTG TGACCACGTT TTGGAAGCCA TTGAGCAGGC 
CCATCGAGAG ACGGCGCGCA ACATTTCCGC CCCCGTCACG AATGGAATGG ACATGTCCAT 
CGAGTCAAAG CCCACAAGCA AAACAGCACC ACCTCCTACG TTGCAGAAAA AAAGCCGCTC 
GGTTTTGTTC GGTGCCATCA TGGGTGCCGT AGTAGCGTGC TGGGTCTTTT CGGGAAACTA 
CATTTTCACC GGCTTATTCA CGCTCATGAC CTTGCTTGGT CAATTGGAGT ATTACCGCAT 
GGTCATGGGG ACCGGAGTCA ATCCGGCACG GCGCATATCG GTCTTGGGGT CCTGCTCCAT 
GTTTTTGACG GCCCTATTTA CACCGAGTCT CCACGAAATT TGTTTGCCCA TATTCGGTCT 
CTACGCCATG ATTTGGTTCT TGACCATGAA ACGGACCGTC ACTACAATTC CGGAAATTGC 
CACGACTTTT ACCGGTATGT TTTATTTGGG TTACGTTCCT TCTTTCTGGG TCCGTATACG 
GATACTAGGT ACCCAAGAAC CAACGCGATT GGCTTCGGTC GCCGAGCCCT TCTTGCGCTT 
TCTCGCGGAC AAGTCGCAGG CTAAACTCGT GCCCAGCTTT ATCCCACAAG CTGTGGTGCT 
TCCCATCACC ACCGGGTCTA TCTTTATCTT TTGGACTTGG CTGTGCCTCG CCTTTAGTGA 
CGTCGGAGCT TATTTTGTCG GGCGACGGTA TGGGAATACC AAACTGGGTG CAGTCGCGCC 
CGCCGCGGGA GCAACCAGCC CCAACAAGAC TGTCGAAGGG GTACTGGGAG GGTGTGCTGT 
CAGTGGTCTA TTGGGTGTAT TCGGTATGTC GATGCTTTAG GAACTTTCGG CTCGGACAGA 
GAATACGCTG CTAACCCATC GTTTTCGTTT CTTTCTGTTA CGTAGGAGCT TGGGCACAAA 
AGTGGCCGTA TTGGGGCGTC ACCGGGGCCG TACACGGAAT ATTATTGGGT CTCATTGGTC 
TCATTGGAGA TCTGACGGCT TCGATGATCA AACGCGATGC CGGCGTCAAA GATTTCGGCG 
ACTTGATTCC GGATCACGGT GGCATTCTGG ACCGCGTGGA TAGTTTCATT TGGTCGGCAC 
CCTACTCGTG GCTCGTCATC AACTCTGTCA TACCGTTTTT GAAAAGCGTC GCTTGA 

 

Protein sequence

MKYWRDDRRT TPNKRKLRYS YYPEQRIAAT HSAHDLSINN VAMTRTLRRG NQLFSVAAVV 
WAYAYVNWNS NPYKLLRTAE ALAPPISYRR TVSPLGYTYR TDASRRIQFF PLTATRSTGS 
AVDTVKNGDQ DSSISVPTGK RFVARQLASL PQRAVRIYSE YVSRLWRETN PEARQIISQD 
KAATAIRRVQ HLIRGEQLAG VVSWEEKNGL ALACDHVLEA IEQAHRETAR NISAPVTNGM 
DMSIESKPTS KTAPPPTLQK KSRSVLFGAI MGAVVACWVF SGNYIFTGLF TLMTLLGQLE 
YYRMVMGTGV NPARRISVLG SCSMFLTALF TPSLHEICLP IFGLYAMIWF LTMKRTVTTI 
PEIATTFTGM FYLGYVPSFW VRIRILGTQE PTRLASVAEP FLRFLADKSQ AKLVPSFIPQ 
AVVLPITTGS IFIFWTWLCL AFSDVGAYFV GRRYGNTKLG AVAPAAGATS PNKTVEGVLG 
GCAVSGLLGV FGAWAQKWPY WGVTGAVHGI LLGLIGLIGD LTASMIKRDA GVKDFGDLIP 
DHGGILDRVD SFIWSAPYSW LVINSVIPFL KSVA