| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_54686 |
|---|
| Symbol | |
|---|
| ID | 7202147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011680 |
|---|
| Strand | + |
|---|
| Start bp | 288517 |
|---|
| End bp | 292557 |
|---|
| Gene Length | 4041 bp |
|---|
| Protein Length | 1226 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002181175 |
|---|
| Protein GI | 219121650 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GATTCGACTC GTGCGTCTTT CGGAAAACGA ACAGGTTTTG TTTATCTACT CTAAAAAGAA
TAAAGTCACC AAATCGATCA CAAGGAACAG GAATCTTACA CTAGTAGCTC GAACATTCTC
CCTGTCGGCG CATAGTCTTT CACCGCATCA TGTCCAACAA CGGGGCGTCG TACCAAAAGA
CCGAGGGCTC GTCCGGGAGT TACCAAGAAA TAGGTGGTAA CGGCGATGGT TCCTCGGCTG
CGGGTGGTTC CGGCACTATC AAGAAAGGTT TGATCGCAAT TGGTCTCGTG GCCATCCTGG
GCATTGTTTA CACCGTCACC AGTACGCGGG GCGATCCGCA AGCCAGCGTG CAGAAAAGCA
TCGAGTCTTC CAGCACTGGA TTACAGGTCA AGGCGAACGG CAAGCTCAAG CTTTTCGACG
ACAACAGTAA GTCGCGCTTT CCCAGATTGT CGCTCTTTCA GACTCTTCTG TATCTAACGG
CTCTCTGTTG CTTGTGTTGT TTCGCAGACC GTTACGTGAT GGAAGATTAC GATGCCAAAT
CAACCTTTTC CAGTTTCTTA CCCGGCGTCG CTGGATACTT TGGCAAGCCC GTTTGGGCAT
TTTACGTCAA CCGCGGTCAA GCCATGGCCA CTTTCGGTAC TGAATCGAAG GATTATCCCA
TGCTCGAATT CAATCCCGCT AACAAGGCGT ACCAATTGAC TCCCTTTGTG GGCTTTCGTA
CCTTTGTCCG CGGCGTGCGC GGCACGACAT CCTTCCAAAC GGAACCCTTT GCTCCCGCCA
AAACACGTAA TCTCGAAGAT GGGGATGATC AAGCTGACAA GACCAAACCC AAGCGTATCT
TGTACGTTGG TGCCAACGAG CTTGAGATTC AAGAAATTGA CGGGGTCCTC GGTTTGACGA
CCAACGTTCA ATATTTCATC CTTCCCGAAG AAGATTTTGG CAGTTTGATT CGTCGCACAA
CGTTATCCAA CTCGGGAGAC ACAGACTTGA CGATTGATGT CCTGGATGGA CTTGCCAAAA
TGGAGCCCTT CGGTGGACCG CTGGATGGTA TGCTCAAGGC CATGGGACGT ACTTTAGAAG
GTTGGATGGG CGTCTACCAT GCGGATGATA CCTTGACTAT GCCCTTTTAC AAGCTTTCCA
CGGAGCCTTC CGACTCGGCA TCGGTCAAGA TTGAGGAGTC CGGCCACTAC TGCTTGTCCT
TTTACGAAGA TGATGAAATG CAGGCGACTC TACTGCCCAT TGTCTTTGAT ACGTCCAAGG
TCTTTGGGGC CGACACATCC CTCGAAATGC CACGCGGTTT GTCCTCGTCC TCCGTGGACG
ACATTTTGGA TACGCCCCAG TACGGGTTCG CCAAAACTTC GTCCGCATTT TCGGCCGCGA
GTGACATTAC TCTCAAACCT GGTGAGAACA TTACTATTGC TACGGTCTAC GGTCGGGCTT
TCCATGTGGA CGACGTCCCC AAGATTGCCG GGGTCGTTAC CGCGCCCGGT TTTGTCAAAA
GCAAATTCGA ACGCGCCCGT TCTATGATCA ACGAACTTAC GGCGGGTGTC GAAACCAAAA
CCGTAAAACC GCTGTTTGAT GGTACCGTCA AACAAATGTT CCTCGACAAC AGCCTCCGTG
GTGGTATCCC GACCATCATG GGCTTGGTCG ATTCCGACGC GACCTACGAC GAAGATTCTC
GCGTCAAAGT TTTCCATTCC TTTTCTCGTA TTCACGGTGA CATGGAGCGT GACTACAACG
CCTTCAAGAT TGACGCCACA TACTTTTCGC AAGGTCCCGG TAACTACCGT GATGTCGCAC
AAAATCGACG CAATGATGTG ACGTTCTTCC CGCGCATGGG TTCGTTTGAT ATTCAAATGT
TTTTGTCTTA CATTCAAGCC GACGGGTACG AGCCGCTGAC GGTGGAAGCT GTAGTGTACC
GCTTTGCGGA TTCTGACAAG GCCGTTGAAA TTGCCAAGAA CGTGACGAAC GATGCCAAAT
CGGCCAAAAT GTTGGGCGAC GTTTTGAACG GCGGCCCATT TCGACCCGGA CAGCTGTTTG
CCTTGTGCGA AAATTTGGGC ATCAACTTAG CTGTCACCAA TGAAGTATTC ATCAATAGAG
TTTTAGAGTA CGCTGAGGAC CGTGCGATGG CTGTTTTTGG ACAAGGATAC TGGGCCGACC
ACTGGGACTA CTACATGGAT ATGATCGATG CGTATCTCGA AATCTTTCCG GATGTCGAGG
AAGAGGTCAT GTACGATAAG CCTTTGCGGT ACTTTTTCTC GACTGCAACA GTAAAGCCTC
GTTCCGAAAA GTATGTGTTA ACGCTTACGT ACGATGCCAA AAGCAAGCAT GTCCTTCAAT
TGGATTCGAC GTATTACGAT TCGGAAAAGG CTGAGGAACA GCAGGCCTTC TTAGACCAGA
ACACTGGCCT TTTAGGTATC GAAGCAAACT GGCAGCGTAC ACGCGAAGGA GAGCCTTTCA
TGAGTTCCGC CATTGCCAAG CTATTTCTGT TGGGTTCCAT CAAGTTTGCC ATGCGCGATG
CCTGGGGCAT GGGCGTTGAA TACGAAGGTG GCCGTCCTGG ATGGTTGGAC AGTATGAACG
GCCTCCCTGG TATGGTCGGT AGCGGCATGC CGGAAACATA CGAACTTTAC TTGCTCCTGC
AATATGTCAA GAAGGTTGTG GACACTTACG ACCGTCCTGT GCACATTCCG GTGGAACTAC
ACACAATGCT GAGTACCATG AACGACGCAT TAGATACTTT GGAAAAAGCT GGCTACGTGG
ACACGGAAGA TATGCCTGCG GCCGTGCCCA AGGCGTTGTT TGAATATTGG GACATTGTTG
CTGCCGCTCG TGAAAGCTAC CGCAATGATG TCCAGTACTA TTTCTCTGGC AACACGACGG
CGTACCGCGC TACGACTGTG TCGAGGATGT GCGACCGATG GCTCGGAGAG ATCCAGAAAG
GCATTGACCG CTCGTTCAAA GTTGCTACGG AAGGATATGG AGATGACGGT ACCTCAGGAA
TTCCGGCTAC CTTCTTTGCC TACGACATAA CCAAGTGGGA GCTTAACAGT AACCGTAACG
CCGAAGGTCT TCCTCTCGTC AACGCTCTCG CAATGAAGGT TCGCAAATTC CCTTTGTTTT
TGGAGGGGCC AGTCCGCTAC ATGAAGATCA TTCAGGATAA TAAGGAACGA ATGAAGGACA
TCTACGAGCG TGTTCTCGAC TCTGGCCTCC GCGACAAGCA ACTCAATATG TACTTTTTGT
CCGCCAGTTT GGAGGGCCAA ACTTTTGATA TGGGTCGCCA GATTGCCTTT GCGCCTGGTT
GGCTTGAGAA TCAGTCCATC TGGCTTCACA TGAGCTACAA ATATTATTTG CAGCTCTTGC
GAGGAAAGCT CTACGAAGAG TTTTTTAGTG AGATGAAGGG AGGCGGTATC CTACCATTTA
TGGACCCTGA TGTGTATGGT CGGTCACTTA TGGAGTGCTC GTCCTTCATC GCCTCGTCCG
CCTTCCCGGA CCCGTCGATT GTTGGCGAAG GTTTCCTTGC TCGTCTCAGT GGTTCCACGG
CCGAGTTCAT GGATATTTGG AAACTTATGT TCATTGGACC CGATCTTTTC TCTTACAACG
ATAAGGGTAA AGTCGAAATG AAGCTGATTC CTGCCTTACC TTCGTGGTTG TTCGACGATC
CCGATGGTGA TAGCGAGCCT ACTCTGGATG ATGATGGCAA CTACGTTGTC TCGTTTAAGC
TTTTTGCATC CATTCCAGTG ACTTATCATA ATGCTGGTGG AAAAGACTTG TTCGGGATTG
GCCCAAAGAG CTATAAGGTC AGCATGTTTG ATTCCAAACC ATTGGAGATT GATGGCCCAG
CTATTCCAGA AAAAATAGCG TTCAAAATTC GTCGTATGTC CGGTGTCAAG TCGATTGACG
CTTACTTCTA ATGTATGCCT TTTTTGGTGA TTGTCTCTAA ATTGATCAAT TTACAGTAAC
TTGATGCTCA ACGATAGGGT GAGGATTTAT TTGTATCGCA AGTCGAAAAT TACGAGTATA
AACTGAGATT TACGTTTCCA T
|
|---|
| Protein sequence | MSNNGASYQK TEGSSGSYQE IGGNGDGSSA AGGSGTIKKG LIAIGLVAIL GIVYTVTSTR
GDPQASVQKS IESSSTGLQV KANGKLKLFD DNNRYVMEDY DAKSTFSSFL PGVAGYFGKP
VWAFYVNRGQ AMATFGTESK DYPMLEFNPA NKAYQLTPFV GFRTFVRGVR GTTSFQTEPF
APAKTRNLED GDDQADKTKP KRILYVGANE LEIQEIDGVL GLTTNVQYFI LPEEDFGSLI
RRTTLSNSGD TDLTIDVLDG LAKMEPFGGP LDGMLKAMGR TLEGWMGVYH ADDTLTMPFY
KLSTEPSDSA SVKIEESGHY CLSFYEDDEM QATLLPIVFD TSKVFGADTS LEMPRGLSSS
SVDDILDTPQ YGFAKTSSAF SAASDITLKP GENITIATVY GRAFHVDDVP KIAGVVTAPG
FVKSKFERAR SMINELTAGV ETKTVKPLFD GTVKQMFLDN SLRGGIPTIM GLVDSDATYD
EDSRVKVFHS FSRIHGDMER DYNAFKIDAT YFSQGPGNYR DVAQNRRNDV TFFPRMGSFD
IQMFLSYIQA DGYEPLTVEA VVYRFADSDK AVEIAKNVTN DAKSAKMLGD VLNGGPFRPG
QLFALCENLG INLAVTNEVF INRVLEYAED RAMAVFGQGY WADHWDYYMD MIDAYLEIFP
DVEEEVMYDK PLRYFFSTAT VKPRSEKYVL TLTYDAKSKH VLQLDSTYYD SEKAEEQQAF
LDQNTGLLGI EANWQRTREG EPFMSSAIAK LFLLGSIKFA MRDAWGMGVE YEGGRPGWLD
SMNGLPGMVG SGMPETYELY LLLQYVKKVV DTYDRPVHIP VELHTMLSTM NDALDTLEKA
GYVDTEDMPA AVPKALFEYW DIVAAARESY RNDVQYYFSG NTTAYRATTV SRMCDRWLGE
IQKGIDRSFK VATEGYGDDG TSGIPATFFA YDITKWELNS NRNAEGLPLV NALAMKVRKF
PLFLEGPVRY MKIIQDNKER MKDIYERVLD SGLRDKQLNM YFLSASLEGQ TFDMGRQIAF
APGWLENQSI WLHMSYKYYL QLLRGKLYEE FFSEMKGGGI LPFMDPDVYG RSLMECSSFI
ASSAFPDPSI VGEGFLARLS GSTAEFMDIW KLMFIGPDLF SYNDKGKVEM KLIPALPSWL
FDDPDGDSEP TLDDDGNYVV SFKLFASIPV TYHNAGGKDL FGIGPKSYKV SMFDSKPLEI
DGPAIPEKIA FKIRRMSGVK SIDAYF
|
|---|
| |