| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_52173 |
|---|
| Symbol | MSH5 |
|---|
| ID | 7202038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011680 |
|---|
| Strand | - |
|---|
| Start bp | 547987 |
|---|
| End bp | 549271 |
|---|
| Gene Length | 1285 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | muts-like protein 5 |
|---|
| Protein accession | XP_002181399 |
|---|
| Protein GI | 219122117 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAACG GCGCCTTGCC TGATGACTTC GAATACGTAT TTTCGGAATC GCTCTCATAC
TTCAAGAGTG CGGAGATGCG TCAACTTGAT CAAAATATTG GTGACCTCGA TGCTTTCATC
AAAGATGCGG AAACATTGAT TGTTGCAGAA TTGGAGGACG AAATCCTGGA CCACGAATCG
GAGCTCCGTG AGACCTTCAT CGCCCTGGCC GAGCTGGATT GCATACTCTC CTTCGCTGGT
GCTGCTGCAG ACTTAGATTT CGTGCGCCCG CGCGTTGTCT CGGCGTCTGA ACAGTGCGTT
GAGATAAGCC GGGGCCGCCA TCCTTTGCAA GAAATTGTTC TCGACACAGC ATTTGTACCC
AACGATACCA CTATGAACAC GACAAGTCGT GTAACCGTAA TCACAGGCCC AAACTTTAGT
GGCAAGAGTT GCTTTGCTCG CCAAGGTCAG TTCTTGAGTG AGGGTTTAAT TGCGATTGCC
AAAAAAAATT CTCGGCGTTG TCTGACTATT CTATTCCTTG TACCTTGTAA GTCGGAGTAC
TCGTCTATAT GGCACACATT GGCTGTTTTC TCCCCTGCGA TGAAGCACGT ATTTCGCTGA
CAGATCAAAT TTTCACACAA TTCAGCTCTA CTGAAACATG TGCTGTCCCT CAAAGCAGCT
TCCAACTTGA TCTCAGCCGT ATGGGAGCTA TTCTCCGTCG AGCGAGTCAG CATTCGCTGG
TTTTGATTGA CGAATTTGGG AAAGGTAAGG TTCGATTTCG AAGCACATAA AAGAAATTCA
GTGGAAGCTG ACATGCTTAT TATCCGCACA AGGTACAAGC CCGGCATCAG GAATCTCCCT
ACTCACGGCG GCTCTGCAAA AGTTGGTATC TAATCGCTCG AAAGTAATCT GCACGACTCA
TTTCCTAGAG ATCTTTTCAA TAGGATTGCT TGTGGACTCT GAGAATGGAA TTTCCGCGAT
GCATATGACT GTGCATGTCC CTGAGACGGC CAATGATAGT GCTGTCCCAC TATTCCGAAT
GGAGCACGGG ATCGCAAATT CGTCCGCTGG ACTCGTTTGC GCGAAAATGG CTGGCGTAAA
AAAAGCCATC GTCGATCGCG CCTACGAGAT AATTAAGGCA ATCAAGAAAC GTCAAAAGGT
CCATCCGCTT GCTGAACTTT TGCGCAATGA TATACACATG ACTCTCGACT CGAAGCATGC
CATCAGATCC TTCGTCAGCA CGAGTTGGAG GGATGCTAGC GACGATCAAA TTGATGCATT
CTTTTCTATA ACTGAAAGGA TGTAG
|
|---|
| Protein sequence | MENGALPDDF EYVFSESLSY FKSAEMRQLD QNIGDLDAFI KDAETLIVAE LEDEILDHES
ELRETFIALA ELDCILSFAG AAADLDFVRP RVVSASEQCV EISRGRHPLQ EIVLDTAFVP
NDTTMNTTSR VTVITGPNFS GKSCFARQVG VLVYMAHIGC FLPCDEARIS LTDQIFTQFS
STETCAVPQS SFQLDLSRMG AILRRASQHS LVLIDEFGKG TSPASGISLL TAALQKLVSN
RSKVICTTHF LEIFSIGLLV DSENGISAMH MTVHVPETAN DSAVPLFRME HGIANSSAGL
VCAKMAGVKK AIVDRAYEII KAIKKRQKVH PLAELLRNDI HMTLDSKHAI RSFVSTSWRD
ASDDQIDAFF SITERM
|
|---|
| |