Gene PHATRDRAFT_51026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_51026 
Symbol 
ID7202110 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011680 
Strand
Start bp195087 
End bp196681 
Gene Length1595 bp 
Protein Length426 aa 
Translation table 
GC content50% 
IMG OID 
Producthistone deacetylase 1 isoform 
Protein accessionXP_002181323 
Protein GI219121958 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCTTTGT CGCTCAACAG ACAGGAAGGC ACATACATTA TACATCAAAG CTATTTTGCA 
ACCATTTTTG ATACTACTTT AATATCGCCT GGATTCAATA GGTCCCAATT CGATAGTAGA
AACATACAAT GGGGGACTCT AGGCGTGTAT CGTACTTTTA CGATGCCGAG ATCGGAAACT
ACCATTACGG CCAAGGTGGG TTGTTGTGCT TCGGATACGT AGATTTGTCC CGCTACTGGG
TTATCCATGA ATAACAAACA GCACAATTGG AGTATTTCAA AAATCACCAT GGGTTACTTG
ATATCTGGGG CTGTGTTCCA ATTGACAGAG AACGACTTTC TCTTACTCAC ACACCCTTGG
CTTTCTCCCG TATTTGCGTA GGCCATCCGA TGAAGCCTCA TCGCGTGCGC ATGACGCACA
ATCTCGTCGT CAACTACGGC CTCTACCGCA AGATGGAGGT CTTTCGTCCT CGTCTTGTTT
CGCCCACCGC CATGACGCGT TTTCACAGCG ACGACTACAT CAACTTCCTC CGAGTCATTA
CCCCCGACAA TATGCAGGAT TACATTCGTC CCCTCCAGCG CTTCAACGTG GGAGAAGACT
GCCCGGTCTT CGACGGTTTG TTCGAGTTTT GTCAGCTCTA CACATCCGGA TCGATTGGCG
GCGCCGCTCG GCTTAACGAA AATCGCGTCG ATATTGTTAT CAACTGGGCT GGCGGTCTGC
ATCACGCTAA AAAGGCCGAA GCCTCCGGAT TCTGTTACGT CAATGACTGT GTCTTGGCCA
TTCTCGAGCT TCTCAAGAAA CACGAACGAG TTCTATATAT CGACATTGAT ATTCATCACG
GAGATGGAGT CGAAGAAGCC TTTTACTCGA CCAACCGCGT CATGACGGTC AGTTTTCACA
AGTTTGGCGA GTACTTTCCA GGAACCGGGG ACGTCCTCGA TGTGGGCTAC GCCCAGGGCA
AGAACTACGC CATTAACTTC CCGCTCAACG ACGGTATGGA TGACGATTCG TACGAATCCA
TCTTTCGTCC AGTGATTGGC AAGATCATGG AAGTATTCGC ACCGGGCGCT GTTGTCTTGC
AATGCGGCGC CGATTCGTTA TCGGGCGATC GTCTCGGCTG CTTTAATCTT TCGGCACAGG
GCCACGCTAA CTGTGTTGAG TTTGTCCGCT CCTTCAATAT TCCAATGCTG GTGCTAGGAG
GCGGTGGTTA TACGCTACGC AATGTACCGC GCTGCTGGAC GTACGAAACG TCAGTCCTTA
CGGGAGAAAA AGTTTCGGAC GAATTACCCT TTAACGATTA TTTCGAGTAC TTTGGACCGG
ATTATCGGCT CCATTTGCCC GTCTCGAACA TGGAAAATCT TAACTCGCGA GCCTATTTGG
ATAAAACCAA GAATCAGCTT TTGGATATAC TGAGTCAAGT TGAGCCCGTG CCCAGCGTAC
AAATCCAAAC CGGACAGATA GATTCACAGA CCAACCCTCG CTCTATGGCG ATGGAAGTGG
ACGACGAGCC TCCAGCGGAG GAATCAAATC CGGATGCGCG CGTAACGAGG GAAGACACTG
GGCGAAAGGA ACACGCGTCC GAGCTGGCGG CGTAA
 
Protein sequence
MGDSRRVSYF YDAEIGNYHY GQGHPMKPHR VRMTHNLVVN YGLYRKMEVF RPRLVSPTAM 
TRFHSDDYIN FLRVITPDNM QDYIRPLQRF NVGEDCPVFD GLFEFCQLYT SGSIGGAARL
NENRVDIVIN WAGGLHHAKK AEASGFCYVN DCVLAILELL KKHERVLYID IDIHHGDGVE
EAFYSTNRVM TVSFHKFGEY FPGTGDVLDV GYAQGKNYAI NFPLNDGMDD DSYESIFRPV
IGKIMEVFAP GAVVLQCGAD SLSGDRLGCF NLSAQGHANC VEFVRSFNIP MLVLGGGGYT
LRNVPRCWTY ETSVLTGEKV SDELPFNDYF EYFGPDYRLH LPVSNMENLN SRAYLDKTKN
QLLDILSQVE PVPSVQIQTG QIDSQTNPRS MAMEVDDEPP AEESNPDARV TREDTGRKEH
ASELAA