| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_13622 |
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| Symbol | RPN1 |
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| ID | 7202013 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011680 |
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| Strand | - |
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| Start bp | 392886 |
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| End bp | 395722 |
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| Gene Length | 2837 bp |
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| Protein Length | 916 aa |
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| Translation table | |
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| GC content | 50% |
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| IMG OID | |
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| Product | regulatory proteasome non-atpase subunit 1 |
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| Protein accession | XP_002181371 |
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| Protein GI | 219122058 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGACG TGAGCCCGAA GGATAGCGGA AACGCGAAGG GCAAAGGTCT CAAGAAGGAA
GAAATTGTCG ATACCTTGTC CGAAGACGAC AAGGAACTCA AGGAGCGTTT GGAAACCTGC
GTAACCACAC TCGTAAATGC AGCAAACGAA GCTTCCGTTA CTACGGCGAT TCGCAATAAC
GCCTTGGATG TGATGGTTAA TGAACTCCGA ACCGCAACAG CTTCAATGAC GTCGGTGCCC
AAACCGCTCA AGTTCCTTCG TCCGCATTTT GCTTTGCTGA AATCCTGTTA CGATGCGATT
GGAGACTGCG ATAACGAACT CATAGAACTG CGTGCTCGCT TGTCAGATGT TTTAGCTGTT
TTGGCCATGA CCATGGGTAA GCCGGAAGAA CGCGAGAGTC TGAAGTTCAA GCTTGCAGGG
GTCAAGGATT ATGCGCTATT GAGGGATCGG AAATCACCGT CGAAACACGC CGACGACAAT
CTAGGATCCT GGGGGCACGA GTTCGTCCGA TCACTGGCGG GTGAAATTGG GCAAGAATAC
GATCAGAGAG TGATTGATGG AGCGGATCCG AATCAAGACG ACTCGTTCGA GGATTTGCTG
TCGATGATCG ACGTTATCGT GCCCTTTCAC GTTTCCCACA ATGCCGAATC GGAAGCGATT
GATCTCTTGA TTGAAGTTCA GAGACTCAAA AACCTATTGA AACTCGATAC AATCGATGAG
ACGAATTACC AGCGCATCTG TTTGTATCTG ATCAAGACAG CGGACTACAT GTCGGACCCG
GACGATCTTT CGGTACGTTG GTGCTTTTGC ACACGCTTGC ACGTGTACGT CACGGCCATG
CAGCATCCCT TTTCTAATGC ATGTTTCTTG CTCTGTAGGA AATGCTGGAA ACGGCACTGG
AAATATTTAA GTCTCAGCAC CAGTACTTCG ACGCACTACG TGTGGCGTTG CGAATGAACG
ACACCGAAAA AATCGCAGAT TTACTCAAGG CTTGTACCGA CCCCTTGATG CGAAAGCAAA
TGTGTCTCTT ATTGGGGCGC CATCGAGTCA ACTTCGACGC CGAAGAAGCC GATATCGAGG
ATGACGACGT TGAGCTGCTT AGTGAGCTAA TTGGTAACGA AAAGCTGAGC GAGCAGTTTC
TCAAGTTGGC CCAGGATCTC GACGTTATGG ATCCCAAAAC GCCTGAGGAT ATCTACAAGT
CCCATTTGGC TGAAACCGGA GGCTTCAGTC GTCGTCGGGA TACGAGTGCG AATGTTGACT
CGGCCCGGGC CAATTTGGCA AGCACCTACG TCAACGCTTT CGTCAATGCG GGTTTTGGTC
AAGACAAACT GATGACTCCC GACAACGATT GGCTATATAA AAACAAAGAC CACGGGATGA
TGGCGGCAGC AGCCTCATTG GGATCGATTC TTCTCTGGAA CGTCGAAGAA GGATTGACAC
AAATCGACAA ATTTTTGTAT TCTAATGAAG ATTACGTCAA AGCTGGAGCT GCGCTGGCCG
TCGGCATTGT AAGTAGCGGT GTACGCAATG ATGCCGATCC TGCGCTGGCT CTACTGTCGG
AACACGTAGA AGGTGAATCA CATGTTATGA AATGTGCCGC TTGCACTGGT TTGGGCATAG
CTTACGCTGG TTCGGCACGT GAAGATGTTA TGGAAATCCT CACGCCGGTT GTAGAGAGTT
CAGAAGGCGG CCCGACCACG ATGATGGAAG TTTCGTTGGC AGGTCTTGCT CTCGGCATGA
TCTTTGTTGG CACATGTGAC GATATGGTAG GAGGTACCAT TGTACAACGG TTGATGGAAG
CAACGGATGA TGAACTGGAT CATACGCATG CCCGCTTTCT TTGTCTTGGA TTGGCTCTCC
TGTTTCTGGG ACAAATGGAA AAGGCTGAAG CTATGATAGA AGCTCTCCGC ACAGTAGAAC
ACAAAATTGC GAAATACGCT GTTGTCATGT TGGAGACTGC GGCCTACGCT GGGTCTGGCA
ACGTTCTCAA GGTCCAAGAG ATGATGCACC AGTGCGCCGA GCACTTGACA GAGGACGCGG
AGCATCAAAT GGCGGCTGTT TTGGGAATTG GTTTGATCAC GATGGGCGAA GCGGTGGGTT
CTGAAATGGC GCTGCGAACA TTCGATCACT TGCTGCACTA CTGCGAATTG CCGATCAAGC
GCGCTGTGCC ACTTTCATTA GCTGTACTAA ACATTTCCAA TCCAGACTTT GCAGTAATCG
ACCAGCTTTC TCGTCTGTCT CACGATCCTG ACATAGAAAT TTCTCAAAAC GCTATTTTTG
GGCTGGGTAT TGTCAGCGCC GGTACAAACA ACTCTCGTGT CGCCGGGCTT TTGAGGCAGT
TGAGCGAGTT TTACAGCAAG GAAGCTGGCC ATATTTTTTG CGTGCGAATT GCGCAAGGCC
TGCTACATAT GGGTAAGGGT TTAATGACAC TTAACCCAGT CCATTCCGAT CGTATGCTCA
TGAATGGACC TGCTCTTGGT GGTATGCTTG TTTTGCTGCA CTCTTGCCTC GATCTCAAGA
GTACTTTGCT GGACAAGAGT CACTATCTGC TTTACTACCT GACATGCGCA ATGAATCCCC
GAATGCTGAT TACAGTCGAC GAGGAATTGA ATTGGCGACC AGTAACTGCT CGCGTGGGAC
AGGCTGTCGA GACCGTTGGA CAAGCAGGGA AGCCCAAGCG TATAACTGGC TTCCAGACGC
ACACGACACC TGTTCTGCTT GCTGCAACGG ACCTAGCCGA GCTTGGCACC GAAGAAGTGT
TCAGCATGAG CAGTGTGCTA GAGGGTATCG TGATCTTGAA AGACAATCCA GACTACGAAC
CCGAAGAAAA GAAATAA
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| Protein sequence | MADVSPKDSG NAKGKGLKKE EIVDTLSEDD KELKERLETC VTTLVNAANE ASVTTAIRNN
ALDVMVNELR TATASMTSVP KPLKFLRPHF ALLKSCYDAI GDCDNELIEL RARLSDVLAV
LAMTMGKPEE RESLKFKLAG VKDYALLRDR KSPSKHADDN LGSWGHEFVR SLAGEIGQEY
DQRVIDGADP NQDDSFEDLL SMIDVIVPFH VSHNAESEAI DLLIEVQRLK NLLKLDTIDE
TNYQRICLYL IKTADYMSDP DDLSEMLETA LEIFKSQHQY FDALRVALRM NDTEKIADLL
KACTDPLMRK QMCLLLGRHR VNFDAEEADI EDDDVELLSE LIGNEKLSEQ FLKLAQDLDV
MDPKTPEDIY KSHLAETGGF SRRRDTSANV DSARANLAST YVNAFVNAGF GQDKLMTPDN
DWLYKNKDHG MMAAAASLGS ILLWNVEEGL TQIDKFLYSN EDYVKAGAAL AVGIVSSGVR
NDADPALALL SEHVEGESHV MKCAACTGLG IAYAGSARED VMEILTPVVE SSEGGPTTMM
EVSLAGLALG MIFVGTCDDM VGGTIVQRLM EATDDELDHT HARFLCLGLA LLFLGQMEKA
EAMIEALRTV EHKIAKYAVV MLETAAYAGS GNVLKVQEMM HQCAEHLTED AEHQMAAVLG
IGLITMGEAV GSEMALRTFD HLLHYCELPI KRAVPLSLAV LNISNPDFAV IDQLSRLSHD
PDIEISQNAI FGLGIVSAGT NNSRVAGLLR QLSEFYSKEA GHIFCVRIAQ GLLHMGKGLM
TLNPVHSDRM LMNGPALGGM LVLLHSCLDL KSTLLDKSHY LLYYLTCAMN PRMLITVDEE
LNWRPVTARV GQAVETVGQA GKPKRITGFQ THTTPVLLAA TDLAELGTEE VFSMSSVLEG
IVILKDNPDY EPEEKK
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