Gene PHATR_50996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATR_50996 
Symbol 
ID7204524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011679 
Strand
Start bp369233 
End bp370745 
Gene Length1513 bp 
Protein Length447 aa 
Translation table 
GC content53% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002185691 
Protein GI219120919 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.235436 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GCTCCACCAG TCTCGTTGTT CTGTGAAAAA ATCCCGCGAT CACACCGACG CAAAATCAAA 
GTAGCACCTT CATCGAGCAC TGTCTTGTTG CTTGCAACCA ACCTAACAAA CGAGCAAGAA
AGTTTTGTTC ACTGAAACAA CCCGCTCGAA GCACTCTGCA GTTTCCAAAA TGACGCACTT
TTCGAAAGTC GCTTTTTCCT TGTTCCTCTC TTGGAGCTTG ACGGGGGAAG CATTCGTCCC
ATCTTCCTGG ACACCCTCCC GCAATCCCGT TCAGAAGGAT GCGGCGTCTC CTTTTGTCAC
TATGTCACGG AGTCGCGCAA GCCAAAGTCC CTTTCATCAG ACTTCACGTT TGTTCATGTC
TACCCGCAAC TCCACCGAAC GCGACTTTTA CGCCATTCTT GGCGTCGGAA GATTGGCTGA
CAAGGCCGCC ATTAAAGCAG CCTACCGAAA ACTGGCCAAG CAGTATCATC CAGACGCTAA
TCCCGGAGTG GATACGACGG AAAAGTTTCA GGAACTCAAC CGTGCCTACG AAGTGCTCAC
GGACCCGGTC TTGAAACAAA AGTACGACCG TTTTGGAGAG CGAGGCCTGG GTACTTCAGC
CGCTTCCGAC GCGGAAGGAT CGCCCTTTGG CGGCGCAGGA GGAAGGGGAC AGGAAGTGGA
TCTGGGCGAT ATTTTTGACA GTTTCTTCGG CGGTGGTAGT AGCGGTATGG GAGGTCGCAA
CGGACCCCGG AGATCCGGAC CCATTGTCGG TGACGATTTG CGTTTTGATC TACAAGTTGA
CTTTAAGACC GCGGTCTTTG GTGGCGAAGA AAAGGTTCGG ATCCGGCATT TGGAAACCTG
CGACACCTGC ACCGGGAGCG GTGTCAAACC CGGCAGCAAG GTATCAATGT GTACCCTTTG
TAACGGCAGC GGAGTTACGG TCCAGGTCAC GCGGACGCCC CTCGGGAATT TTCAAACGCA
GCAAACCTGT GCGACGTGCC GTGGTACCGG AGAACGCGTC GACGAATACT GCGGTACCTG
CGGAGGACAA GGTGTCAACC AAAAGACTAA GCAAATCAAG GTGACCGTGC CTGCCGGCGT
CGAGGACGGC AACAAGCTCC GCGTGCGAGG GGAAGGAGAC TCGGGTCCCA AAGGTGGTCC
CGCGGGTGAC TTGTACATTT TCCTCAAGGT CAAGGAAGAC CCCACATTCC GTCGGGAAGG
TTCCGAAATA TATTCGGATA CCACCGTTAG TTATTTGGAC GCTATTCTGG GAGCATCCAT
CAAAACGCCC GTCGTCGATG GCGAAGTTAC CATCAAGATC CCGGCTGGAA CACAACCAGG
TCAAGTCATG CGTCTGAAAG GCAACGGTGC GCCGCGATTG GGCAATGCCG ATTCACGAGG
AGATCACTAT CTGACCATTA ATATAGATAT CCCGAAAGAC CTATCCAAAG AAGAGGAGAA
CCTCTTCAAG CAACTCAAGG ATTTGCGAGA TCAGAAAGGA AAGAGAATGG GCAGTGGCAT
CTTTGGACGC TAG
 
Protein sequence
MTHFSKVAFS LFLSWSLTGE AFVPSSWTPS RNPVQKDAAS PFVTMSRSRA SQSPFHQTSR 
LFMSTRNSTE RDFYAILGVG RLADKAAIKA AYRKLAKQYH PDANPGVDTT EKFQELNRAY
EVLTDPVLKQ KYDRFGERGL GTSAASDAEG SPFGGAGGRG QEVDLGDIFD SFFGGGSSGM
GGRNGPRRSG PIVGDDLRFD LQVDFKTAVF GGEEKVRIRH LETCDTCTGS GVKPGSKVSM
CTLCNGSGVT VQVTRTPLGN FQTQQTCATC RGTGERVDEY CGTCGGQGVN QKTKQIKVTV
PAGVEDGNKL RVRGEGDSGP KGGPAGDLYI FLKVKEDPTF RREGSEIYSD TTVSYLDAIL
GASIKTPVVD GEVTIKIPAG TQPGQVMRLK GNGAPRLGNA DSRGDHYLTI NIDIPKDLSK
EEENLFKQLK DLRDQKGKRM GSGIFGR