Gene PHATR_46935 details

Gene Information

• Locus tag: PHATR_46935
• ID: 7204759
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011679
• Strand: +
• Start bp: 861823
• End bp: 866768
• Gene Length: 4946 bp
• Protein Length: 689 aa
• GC content: 47%
• Product: predicted protein
• Protein accession: XP_002185798
• Protein GI: 219121136

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0448198
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGGAA CTGCGCCCAA TTGTTAGTAA ATCAATCCTC ATGATGGGGT TTCCCGAGCT 
CACAACCCGA TGAGGGCTCT TCTCCATAGC GTGTTGACTG CGACTTCGAC TGTGACTAAC 
AACAGTAACT GTAAATTGGC ACCTTCCCCG GGTGCTCACT AACATGTAAC TGCTAAAGTC 
TGTTCATACG ACCAAAATAG TATCTACAGG CGTTAGCACT TCTGACAATG AAAGGTCTAT 
GATCTGCTTT GCTTTGAAGT GTCGGGGGAG AGTAACTATT GAACATGATT CGTAGGCGGA 
GAATTTCGAG CAATGATCCA GGAAAAGACG AGGTGGGCGT CCAAGACACA ATTACCTTTT 
TCACCACTGA CATCACAGCT CTCAATACTT TGGGCGCTTC GATTTGGACG TATTTGGCTA 
GAGCCGCTGG GAAATTGCAG GCTACGATTC GTATAGCTAG CTTTCTATTT ATGGGGTACG 
GCTTTTTTCT CTCGCAAACT CTTTTGTTCA CTTCGGAAGA ATGCGGCATG ACTTATTCCT 
GGCGCCGTTT TCTTGAGCTG GATATATCCT CCATTCATCC TGTAGGGCGT TCTCCATATC 
GACTGTACAA ATTCTATGAT CAGCGCGACC CCCGACATGA ACGCTTTTTA CAGCAAGAGA 
GCGTGACGAC TTCAAGAAAG GCTTCCACGG ACTGGTGCCT AAACGCCGCC TTCCCGACTG 
CTGTTGTGTA TATTCCAGGT CACGGCGGAA GTTATCAGCA AAGTCGAAGT TTGGGTGCGC 
ATGGAATACA GCTCACGCGA CAGCGGGATG TGACGCAAAA CTACGTTGTG CAAGCGTTAC 
AAAAGGGAAT GTGGCATGGA AACGCGACGC AGCTGGAAAA CTTTGTTTAT GACGTGTATG 
CTTTGGATTT TGCTGAAGAA GGTGGTGGTA TGCATGGAGA TTTTTTGGTG GATCAGAGTC 
GGTTCGTGTC GAAAGCGATT CATTTTTTGA GCGAAGCATG TGGCTTTTCC AGTATCACAG 
TTGTCGCCCA CTCCATTGGT GGCATTTCGA TCCGCTTAGC TTTAGTTCGT GATGAAAAGC 
TGCGCCTTTT GGTTACAAAT GTTATTCTAC TAGGATCACC TCAAGCACGC ACCGTTCTAG 
CCTGGGATCC CTCTTTGGAA AAAATTCAGA CAGAAATTGT TGAAAATCAC GTAAATGGTA 
CTGCTTTTGT TGCCATATCA GGCGGCCTAC GCGACGAAAT GATTCCTCCC GCAGCTTGTG 
AACTCGTTCC TAAAGATAAT AACACCTTGA CACTTTTGGC TGTTGATATC ATGCCTAAGG 
AGGCGTCAAG CCCTTCGTTT GGAATGGACC ATCGCGCAAT CGTGTGGTGC CACAATGTTT 
TGGTACCACT GCGGAAAATA ATTTTTGCTC TAGTCAGGTC GGAACGCGAT GGAGAGGCTG 
CACCAGCAAG AATAGGAGCA GTACAATCGC TGTTTGATCG AAGTAAGACG CAAAACTATA 
ACACTGCACT TCAACGTATG ATGACGACGT TTCGGGTAAG AATTGCTTTG AGGTCCGTTG 
TTCTTTTAAG GCGTGGTCCT CTCATTCAAA AGCTGCTTTT ATTCTTAAAA GAAAGTGCAC 
GGACCAGTCG CCAGTTTAGC CATGGTAACT GGTCTCCTTC ACAATGCCGA ATTGCTACTG 
GGTTTATTTG CTTACATCTC CCTGTGGAGG TACGTATTCC GCTTTTCGGC AATGCTGCCA 
ATAACTTTTC CTTTCGGGTG CGGCTTGTTT TGCTGGGTAA CAGCAAAGCT GGATTTGCCT 
CTTGCTTCAA TTCTCATTTT GGCGTTTTCA GCGGACGCAA TCCGAGCTAC TTTGTTGTGG 
ACAGCACATC AGTCATCAGC ACTGAAGCCG ACGACGTTCC AAAGCAACGG GATAAGTTGG 
CGCTGGGCGG TATGCTCCAT CGTTACCTCA GTCAGCATTG TTCATGTCAT CTTTGGCGTC 
GTCCGTCTCT TACGTCCCAA TGATTTTGCC ATTGAAATGT CAAATTCAAT CAATATTGCA 
TTGATCGCCT CGATCTATCC ACTGGCTCTC CGACGCATCC ATAAGTTTGC ACAGAAGGTT 
GGTAGCTCCC GCTTTTCTTT CATTGACCTT GATCTATTGA CGATTGTAGT GGTCCCGTTT 
TTGGGCGCTG GAGAATTTGC TTATGTGCTG TCTAAAGGCT CTGTGCAAAG GTCAACACTA 
CCGATGCTAG CAGCGCCTTT CCTCATTCGA TTGGTCTTAA CCTCGAGCGA CCCAAGCATT 
CCACCGCATT CGTCTCGAAA ACGGTATATC TCAGATGTCA TCCGCACACT TCAGGTATGC 
ATTCTCTTGG TGGTTGGTCC TAGAGTTCTA CAAACGGGAT CAGGCTTGGC GTATAGTTTT 
AATTTACCAC TCGGCGGACT GGTGGGTATG ATGATGTGGA CGGATACGTT ATGGTCATTA 
ACGATTAGCG GACTAGGTTA GTTATTGTCA ATGCAATTGT TTTTGCGTAG CACATCCCTG 
GATTGTATCC GAATATGTTC CATCCGTATA GTAGTAACCG CAGAATCAAT CACTTCATGG 
GAACATGGAA GCACTTGGGT CCACTTATCG TACACCTATG GCATCAAATC GTTTCCAAAA 
GCACCGAGGT CTTGGTTAAA ATCTTTGTCG TACTTTATTA CTGGTGTGCC GTCCTTCATT 
GGCTGCTATG CTCAGCTGTC GTTTAACTGC CCTCTCATCC AAATGGTCTG GAATTTGTTC 
TGTATATTCC TGGGAATGAA CTGATTCAGC AAGGTTGAAT GGGTAAAGGG AGCGCCGCTT 
CGAAAAAATA GATCCCTCGA CACAGTACGG AATAACCCCA TACTGGTTAC TATCGATGAA 
TCCTACCCAT CCCAGACTGG CAAAAGAAAC GTCCATTACA TATCTTCCGG ATGCAGAAAC 
AAATTCCTTA TAACCCGCCA CGAATCTCCC ATCCGGGGCA GTCTCAGTCA AAAATGGTAG 
TAAGGGAAGC GAATATTCAT CGGCCAGCCC CCTCACTTCG TTTCTAGTTG CTTCAAAAAT 
TCGTTCTTTT ACTCTTGCAA TGTGAAATGA TGGGATGGTG GCTCGATCCG GAGCTCTTGA 
TGTTGGAACA ACCCGAAGTC TCAGAGATGG ATGTAAAAAA GCCTGTGCAT TTATATGATG 
CTTCGCCTGC ACTACATCTA TACGGCCCAA AACGCAGGTC TCCTCGTCTT CGTCCCATAT 
GCCTTTCGTG TTTTCTTCAT CCTTGCCCAT CCAGCTGGCT TCGATTAAGA GGCTCTGTCC 
CTCCCGTAAC GATACTTTCA ACCCATTCCT TGAAGCCGGA ATAGGAATTG CTTCTGGGCG 
AGTGAGTGGT TCCATCAAGT GTGCAGGGAA AATTTTGTAT TGAAGCGCAC GTGGACTAAT 
AACACCGGGT GTGTCCCACA AAGCGTGAGA GTCCGAAGGA AAACATGGCA CGCGAACTGC 
TTGCAGCGTG GTACCGGGTA GATTCGATCC GGTGACTTTC AAATTCTTGA TCGTGGCTCT 
CCGTTTTACA GCGAATCGAT TTTGTCCCTT TAAATACACC GATTCAGCAA TTAAAGGTGA 
CAATGTTTTC ACCAAACTTG ATTTTCCGAC GTTGGCAGTG CCGATGACGA ACACATCTCT 
ACCTCCTAGC TGCAGGAGTA TGCTTTCAGC CAACCGCACC AATCCGACGC CATTTGTAGC 
ACTAACATCG AAGACGGATG TAAATCGGAC GCCGGACATT GCCTCAATTC TCCGAGTTAT 
ATTCATCACA TCACTTTCGC TGCAACGAGG CAACAGATCA ATTTTGTTTA TCACCAATAT 
CACCGGAATG CTTCCAATAG TTCTACGCAG ATGCTTAACG ACAGTGTGTT CCGGATCAGT 
GGCATCCACC ACCATTATAC ACATTCCAAA CTTGCGTCGG GCTACAATGA AGCGTAGCTG 
CTCGCTAAAG ACTTTGGGTT CAATATCGCG CAAGGCATCG TAGGCTCCCC AAATATCATT 
TCTTTGTAAC GATTGACAGC GACTACAGAG AAAACTATCC ATTGGGCGTG TCGCATAATC 
TCCAACATCC ATGTAACGAG TTTTCTTCTG TATTCTTTTG CTTAAAGATG ACGTATGCTC 
CATGGTATCT TCGCCACCGA CAAGGCGAGT TCCTGTTATG TTCGCTGAGT CTGTATTGTT 
CGACCTTCTA CCGGATACCT TGGCTGAAAC AACTTGTGTC CCGCAGCCAG AGCAAAGTTT 
CGGTACAGCA TTTGATATTC GTTTGCCAGC ACTGTGCTGC TGGAGAACTA CCCGGCCTTT 
CACTCCTCTT GGAGGCGAGC CGCCAGCTTT GTTCGGTTTG CGCGTGGCGA TTTTGCTCGA 
GGACGAAATG GTTCCGGGAG CACCCGGGTG TTTCTTCCCT TTGGAGCTGC TCGGTTGTTT 
CTGTACCGGC GACTGCTGTT TCTTTTTACT GCTGCCCTTC TTTTTTGACT TTGGGCTTTT 
TGCAGCAACG GCAAAACGGC GAGATACTGT TGCTGTGGGG GCTAGTTTGG ACGATAGGAA 
CGTATACGAC CTTCCTAATT CCGCTAGCAA AAAGGGACCA GCGGAAAGAT GTTGCTGGGC 
GGACCAAGAA AACGCTGCCG TTGCTGTTTG GTAAAGGTAT TGCTGATTGT TGTAGCGATC 
TATCGTTGTT ACGACACTGC TCGCTGGGAA CACAGGAGTC GGCTGTTGTA ATTTCATCGC 
GGTCAAGCCT TTTCGCGGAG AGGCGCCTAG TCGTATCCCT GTTCTAATCG ATCGCAACAT 
GCTTGCATAA CAGCTACCCT GGAAAAAGGT GATGGGAGTG CAAGGAAAGG ACGCTAGACT 
GTGTCACTTG AGCTTCTCTA GTTGTGCATG AGGAGAGAAG CCAGATCAAC AAAAGAAACT 
TGTTTGGTAG TAAGGGTGAT TGAAGG 

 

Protein sequence

MSGTAPNLST GVSTSDNERR RISSNDPGKD EVGVQDTITF FTTDITALNT LGASIWTYLA 
RAAGKLQATI RIASFLFMGY GFFLSQTLLF TSEECGMTYS WRRFLELDIS SIHPVGRSPY 
RLYKFYDQRD PRHERFLQQE SVTTSRKAST DWCLNAAFPT AVVYIPGHGG SYQQSRSLGA 
HGIQLTRQRD VTQNYVVQAL QKGMWHGNAT QLENFVYDVY ALDFAEEGGG MHGDFLVDQS 
RFVSKAIHFL SEACGFSSIT VVAHSIGGIS IRLALVRDEK LRLLVTNVIL LGSPQARTVL 
AWDPSLEKIQ TEIVENHVNG TAFVAISGGL RDEMIPPAAC ELVPKDNNTL TLLAVDIMPK 
EASSPSFGMD HRAIVWCHNV LVPLRKIIFA LVRSERDGEA APARIGAVQS LFDRSKTQNY 
NTALQRMMTT FRKVHGPVAS LAMVTGLLHN AELLLGLFAY ISLWSKAGFA SCFNSHFGVF 
SGRNPSYFVV DSTSVISTEA DDVPKQRDKL ALGVSIVHVI FGVVRLLRPN DFAIEMSNSI 
NIALIASIYP LALRRIHKFA QKVGSSRFSF IDLDLLTIVV VPFLGAGEFA YVLSKGSVQR 
STLPMLAAPF LIRLVLTSSD PSIPPHSSRK RYISDVIRTL QVCILLVVGP RVLQTGSGLA 
YSFNLPLGGL VGMMMWTDTL WSLTISGLG