| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_46880 |
|---|
| Symbol | |
|---|
| ID | 7204724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011679 |
|---|
| Strand | + |
|---|
| Start bp | 695650 |
|---|
| End bp | 697410 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185767 |
|---|
| Protein GI | 219121071 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.68572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AAAGTCTGAC ACTCTGTGTG TGTGAGCACC ATGACAATTC GTATCCAACC CACCGTCCCC
TCTCCCAAGA TCTACTACTA CTCCTACTGC TACTGCTGGT GGTACATGGG TCTCGTGACA
CTCGCCGTTT CTTGTATTCT GCGTCCACCA GCACTGCTGG TCCACGGTTG GGCGACGACT
CCCACGCGCG TGTTGGGGAT TGTGGGTCGG ACGTCCGCAC TCGTCGCGAG TAGTGCCGAG
ACTACCCGTC ACCGTCACGG TGCTTCCTTG TCCATGAGTC AATCGCCGTC ATCGTCGTCG
TTCGGATCCA TCCTTGGGAA CCTGGTGTCG TCGTCGTGGA ACAGAAGCAA CAGCGGTCCG
TCGGCGGTGC CCGGGCTCGA TCAAGCCTTG ATCGAATCAC CACGTTCTTC CTGGAACGAA
ATTCGATCCC TCTTGGAATC CCGAATGACA ACCAATGCGG AACGGAACTT TCGGAACAAT
CTGTCTACAG GATACGGCGT CGCTTCCCCA CTGCACAACG TTCGATTGTA CGACGAAGCC
AACCAGGAAT CCGACGTGCG CGTTACCTTT TATCGAGACA GTGCGTCCTG GTGTCCCTAC
TGTCAAAAGG TGTGGATGAC ACTGGAAGAA AAACGCATCC CGTATCGAGT GGAACGTGTC
AATATGCGCT GTTACGGGGA TAAGCCAGCC TCCTTCTTCC GGATCCAGCC TGGAGGGCAA
ATCCCCGTGG CCGTCATTGA CGGCAAGGTC TACGGACAAT CCAACGACAT TTTGTACGCT
CTCGAGGAGG CCTTTCCGCA ACACAAATCT CTCGCTCCAC CCCAGGGCAT GGCAATGGAA
GCACAACGAC TGTTGCGATT GGAACGCAGT CTCTTCTCGG TCTGGATGTA CTGGTTGACG
GGTGGTAGAC AGCGCGACGA GTTTCGGGCA ACACTTGCCG AGGTCGAAAC GGCCTTGGCA
CAGAATACGG ACGGACCGTT CTTTCTGGGT CGGGACGTGA CCATGGTGGA TTGCATGTTT
GCGCCCTTTT TGGAACGCAT GGCGGCGTCA CTCTTGTACT TCAAAGGCTT TCAATTCCGG
GTTGCTCCCG GTGTCCCGAC GGACTATCCC GCCATCAACG CCTGGTTCGA CGCCATGGAA
ACACGGGAAA GTTATCAACT GACCAAGAGT GATTACTACA CACACTGTTG GGACTTACCG
CCCCAACTGG GCGGTTGTGT CTACGAAAAA GGTGGCGAGC CCTTTGAACA AGCCATCAAC
GGCGACCGTC GGTTGGACGG CACGCACAAG AGTTGGGAGT TGCCGCTGGC GCCGCACAAC
GGAGGGATTG AACCGGACTG GGAATGGGCC GGTGACGAGG CGGCGGCCCG ACGGGAGGCG
GTGGAACGCG TGTCCGCCAA TCACCAAGCC ATTGTCAAGT TTGCCGCCCG TGGAGCCGGC
ACCAAAGGAC TCGTGCCCTT TTCGGCACCC CTCGCCGATC CCAAGGCGAC ACCCAACGAA
GCCGTCCTCC AGGCCGTGGA CACATGTTTA CAGATTGTTT GCCTGGCGTT GCTGGAAGGG
ACCGACAAGT ACGATACCGA CATGGTCAAG GTTGCGCATA TTATTCAGGA AAAAGGCGGC
CAGGAGTTCA CCAATGGCGT TGTCGCCAGT CTCGCATATT TGCGAGATCG TGTGGGTGTT
CCACGGGACA TGCGCTTACC GGCAGCTCGG CAGTTGCGGG CACACCTGAA TTGGTCCGTG
GGCAAGCTTT TGGATACATA A
|
|---|
| Protein sequence | MTIRIQPTVP SPKIYYYSYC YCWWYMGLVT LAVSCILRPP ALLVHGWATT PTRVLGIVGR
TSALVASSAE TTRHRHGASL SMSQSPSSSS FGSILGNLVS SSWNRSNSGP SAVPGLDQAL
IESPRSSWNE IRSLLESRMT TNAERNFRNN LSTGYGVASP LHNVRLYDEA NQESDVRVTF
YRDSASWCPY CQKVWMTLEE KRIPYRVERV NMRCYGDKPA SFFRIQPGGQ IPVAVIDGKV
YGQSNDILYA LEEAFPQHKS LAPPQGMAME AQRLLRLERS LFSVWMYWLT GGRQRDEFRA
TLAEVETALA QNTDGPFFLG RDVTMVDCMF APFLERMAAS LLYFKGFQFR VAPGVPTDYP
AINAWFDAME TRESYQLTKS DYYTHCWDLP PQLGGCVYEK GGEPFEQAIN GDRRLDGTHK
SWELPLAPHN GGIEPDWEWA GDEAAARREA VERVSANHQA IVKFAARGAG TKGLVPFSAP
LADPKATPNE AVLQAVDTCL QIVCLALLEG TDKYDTDMVK VAHIIQEKGG QEFTNGVVAS
LAYLRDRVGV PRDMRLPAAR QLRAHLNWSV GKLLDT
|
|---|
| |