| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_46821 |
|---|
| Symbol | |
|---|
| ID | 7204678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011679 |
|---|
| Strand | + |
|---|
| Start bp | 552284 |
|---|
| End bp | 554083 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185726 |
|---|
| Protein GI | 219120989 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.24642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATATGC GACCGTCACC CAAGGCAAAT CGGTGCGTCT CCAATTCCCG TTCGACCTCT
CCCCAAACCG CACACGCCCA TCCGCTCGCA TTGCTGACTA ACATGGTGCA AGGGATTGAG
ACCATTTCGT TCCCTACCAA CGCCGCCGGC ATGGCAATCA ATCGCCGGTC TCCTCGTGCG
GATCGTAGCT CGACTCGTAC GTCCCTACAA CGAGACGCGG CGTCGTCGTC GTCGTCGTCA
GCAGCGGGGA ACCGTCGATT CCTGCCCGTC ACGTCCGCTT ATCTCAGATA TCAAACGATG
CACACCTTTG TCGTGAGTCA ACCGATGAGC GCTGCCGTAC TTTTACTCCT CGTTGTGGCG
GCACTCGACG GTTTTTACGA AAGTGTACGC GTACGGCACC CGTACAATTT CGCACACGGG
TTGTCCCCCG CGTCGGGACT TTCCAAACTC CCCTCGTCGT CTCTCCGCCG GACGGCAACG
ACCGGTGCGA ACGGATCCGA ACTACCGACA CCACTGCTAG CCAAGCATTC GACTACGGCT
ACGACTGCAG CCAATGACAC GGCTTCGATT CCTACCGCCG ATAATGCACC CCCAACAACC
CGAGTTCAAT CGGCTTTCGC GGACAACAGC GTCAGCGACA ATCCGTCGTG CCTCGGCAAG
GAGCATTTGG TACAGATTCT GATCGCCGCG GGGAAAACTC CGGAGGAAGC CGAGGCACAG
TGTCCCACCC TACCTCTCTG GCAAGAAGTG GTGGATCTGT ACGGCGACGC CCCCATCATA
CTGGGGCAGG AGCGGTGTCA GGCCTACCGG GAAGCCGTGC GCAATCAGTT CGAAGACGCA
CCTCCTCTGC ACAACATTCG CGTGGACGGA CTCTTCAACG TGGGTACCAA CGCTCTGGCA
CAGAACAATT TGTTGAATCT TGAACACGGA CGGTACTTTC AACCCAATTT GTCCTTGGAC
GATCCGGACT ATGCGGAAAA GCTGGGCGTG CTCCTCTTCG TGGGTTGGGG CAAACATTCC
ATGATCAAGT ACAAGCCAAC TAATGCGAGG TTACAGTTAC CCGTAGTACT CGTCCGAGAT
CCCTACCGGT GGATGAAGAG TATGGTGCGT AAGCATTTGT TTGATGAAAG AGAATTCTAT
CGTTTGTGTT TGTGTATATA TATATACATG TGTGTGTGAT TGTGACCGCG GAAGTGTTCT
ACTTTTTGTA CATGGTTCAA CAGAATAGGC CTACCGACTG ACACGAATGG CTCTGCCAAC
CCTTCCATAC AGTGCAAAAC TCCGTACCGG GCTGTTTTTG ACCAACAACC CAATCATTGC
CCCAACCTTG TCCCTACCGA GGACGAACAA CTCGCCTCCG GCAATTTAAC TACCTACAAA
GTTTCGGTCA CTCAGAATGC CCACAGTACG GTGACGGACG AATTCGATTC CCTCGCCGAC
TACTGGTCGG AATGGAACCG CATGTACCGG GACGTGGAGT TCCCGCGGCT GATTGTACGC
TTTGAGGACA CCATTTTTCA CGCGGAAGCC GTCATGGACG CGATTGCCCG TTGCGCGGGC
GTGGAACGGG CAAAACCTTA CCGTTACTAC GTAGAACAAG CCAAATCCCA CGGTCTCAGC
TCCAATTTTG TGACAGCCTT GGCCAAGTAC GGGACAAGCC AAGGACGGTT CGACGGCATG
ACTCCAGCCG ACCTCGCTTA CGCCCGGACC CATCTAGATC CGGCACTCAT GAATACGTTT
GGTTACCAGT ACCAAGGCAG GTATACTGCG CCGCAAGTTT CATTGGCCAA AGAGTCTTAG
|
|---|
| Protein sequence | MHMRPSPKAN RCVSNSRSTS PQTAHAHPLA LLTNMVQGIE TISFPTNAAG MAINRRSPRA
DRSSTRTSLQ RDAASSSSSS AAGNRRFLPV TSAYLRYQTM HTFVVSQPMS AAVLLLLVVA
ALDGFYESVR VRHPYNFAHG LSPASGLSKL PSSSLRRTAT TGANGSELPT PLLAKHSTTA
TTAANDTASI PTADNAPPTT RVQSAFADNS VSDNPSCLGK EHLVQILIAA GKTPEEAEAQ
CPTLPLWQEV VDLYGDAPII LGQERCQAYR EAVRNQFEDA PPLHNIRVDG LFNVGTNALA
QNNLLNLEHG RYFQPNLSLD DPDYAEKLGV LLFVGWGKHS MIKYKPTNAR LQLPVVLVRD
PYRWMKSMCK TPYRAVFDQQ PNHCPNLVPT EDEQLASGNL TTYKVSVTQN AHSTVTDEFD
SLADYWSEWN RMYRDVEFPR LIVRFEDTIF HAEAVMDAIA RCAGVERAKP YRYYVEQAKS
HGLSSNFVTA LAKYGTSQGR FDGMTPADLA YARTHLDPAL MNTFGYQYQG RYTAPQVSLA
KES
|
|---|
| |