| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_46668 |
|---|
| Symbol | |
|---|
| ID | 7204408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011679 |
|---|
| Strand | + |
|---|
| Start bp | 130360 |
|---|
| End bp | 131788 |
|---|
| Gene Length | 1429 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185635 |
|---|
| Protein GI | 219120807 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000812304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCTGTACTGT TACGTCCTAT CAGAAAACCA TTTCTTTCTC GTTCCATTAT TTCTTCTCAT
GAATTACCAG TAAATGGGGA GCAATGCGCA TCGCCATCTC GAGCTCGACG TTCAAGATTA
CCAAAGTAGC CAAAATGGGG GGCGTCGGGA TGACACTGCC GCTTTCGAAC AAGCCATTGA
CATTATTCGA AGTAATGGAG GCGGTCGACT GATTATACCC GGAGCTCCAG ACGGATCCTT
CAACCTATAC CGTATCCGAC CCATCAATCT CACATCCCAC CTGGTCTTGT TTTTGCAAAA
GAATGCCGTC ATAACCGCGA TTGCCGACGA ATCCGTGTGG CCTCTCATTC CGCCCTTGCC
CAGCTATGGA CAAGGACGGG ACCACGTCGG CCCGCGTTAC AGTAGTCTAT TACACGGGGA
ATACCTCACC AACATCACTA TACGGGGTGA ACCAGACAGT CCCGGAATCA TTGACGGGCA
AGGGCGATAC TGGTGGGACC GGCGCCGCCA CAATCGGGAT CGATACACCC GGGGTCACTT
GGTGGAATTC ATGTATTCCT CCCGGATCCG TATGTATAAT CTACGTTTGC AAAATTCGCC
CTTTTGGACC AACCATTTTT ACGATTGCGA CGACGTGCAT GTGCAAAATG TGCACGTCAA
AGCGCCCTGG AGTTCGCCTA ATACCGACGG ATGGGATCCC GACAGTAGTC GGAACGTCCT
GATTGAAGAC TCCACCTACC GGGGCGGCGA TGATTGCGTG GCAATCAAAT CGGGATGGGA
CTGTTTCGGC ATCGACTACG ACACACCGTC GGAAAATATT ACCATCCGCA ACGTTACGTG
CCAAGGGCCG TACGCAGGAA TTGCGATTGG GACCGAAATG AGTGGCGGTG TGAGAAATGT
GACCGTAGAA AACGTTACTT TCACGTACGC CAACAAACCG GCGAACATTA AAACCGGAAA
CACTCGGGGC GGATACGTGC ATGATGTTGT GTATCAAAAC ATTCGAATAA CGGGGCATAT
TGACCAGGCT ATTCATGTGG ACATGTACCA TTATCATAAC ACTCCAAATC CGTCCTGCTC
CAACAATTAT CAACCCAATC AGTTGCCGCA TCTACGAGAC CTCTACTTTT TCAATTTTGA
AGGAACCCAA GCATTGACAG AGAGTCACGA AGTCTTCCAC TTTGTAGGCC TTCCCGAAAG
TCCAATCGAA TACGTCTTCT TGGAGAACAT ATCGTTTCCG ACTCCGGTGT CGAGTTTGGG
ATGGAATTGC TCAAATGTGC AGGGCTCTGT GAAGAATAAC AGTGTCACCC CTTGGCCTCC
CTGTCCCGAA TTTCCGTCGG TGACGGTGGA AAATTCTGAG ACGATGTCAC CTTGGAATGC
TTTCCTCACT TTTCTCTTCT TGACAACAGC GGTCCTTGGG AGAGCGTAA
|
|---|
| Protein sequence | MGSNAHRHLE LDVQDYQSSQ NGGRRDDTAA FEQAIDIIRS NGGGRLIIPG APDGSFNLYR
IRPINLTSHL VLFLQKNAVI TAIADESVWP LIPPLPSYGQ GRDHVGPRYS SLLHGEYLTN
ITIRGEPDSP GIIDGQGRYW WDRRRHNRDR YTRGHLVEFM YSSRIRMYNL RLQNSPFWTN
HFYDCDDVHV QNVHVKAPWS SPNTDGWDPD SSRNVLIEDS TYRGGDDCVA IKSGWDCFGI
DYDTPSENIT IRNVTCQGPY AGIAIGTEMS GGVRNVTVEN VTFTYANKPA NIKTGNTRGG
YVHDVVYQNI RITGHIDQAI HVDMYHYHNT PNPSCSNNYQ PNQLPHLRDL YFFNFEGTQA
LTESHEVFHF VGLPESPIEY VFLENISFPT PVSSLGWNCS NVQGSVKNNS VTPWPPCPEF
PSVTVENSET MSPWNAFLTF LFLTTAVLGR A
|
|---|
| |