| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_36720 |
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| Symbol | VPS45 |
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| ID | 7204608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011679 |
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| Strand | + |
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| Start bp | 217495 |
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| End bp | 219162 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | |
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| GC content | 47% |
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| IMG OID | |
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| Product | predicted protein |
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| Protein accession | XP_002185656 |
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| Protein GI | 219120849 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTTT TGTTGCTAGA TGCCGTGACG ACGCAGGTTG TATCGTCAGT ATATTCACAA
ACGGAAATAC TCAATCAACA AGTGTATCTT GTTTCGCGGC TGGATGAGAC AGGAAGCCAT
ACAAACGGGT CTGCATCTGT TTCGAAAAGT CATCTCAAGG CCGTCGTTTT TTGCCGGCCT
ACACAAAACA ATGTGAATTT GATCGCTAAA GAACTCAGCC AACGCCCACG ATTTTTGGAG
TACCACATCT TTTTTTCGGG AATTCTTCCC TCCGGACTCG TACGCGTGCT AGCTGAAAGC
GATAGAACCG AACGAGTTCG GCAGGTAAAA GAGATTTACG CCGATTTTTT ACCCGTAAAT
GAAGATCTAA CGAGTCTACA ATGTCGCAAC ACACTCGCTA TGACGGTCGC TGCCGGAACA
TCCTGGGCAC CGAAGTATGC GGCACAATAC GAGCGCAACA TACAAGGACT CCAGTCCATG
CTGCTGGCTT TGAAACGACA GCCGAGTTGT ATCCGTTACG CGGGGCATTC GGCATGCGCC
GAAGAGCTAG CGAAAGATAT GCACGATGCG ATTCAAGCTG ATGAAATTTT CCACTTTCGA
AGAAGTAATG CTGGTGGTTT GCTGCTTTTA GTGTTGGATC GTCGAGACGA CCCTGTTACG
CCACTGCTTA GCCAGTGGAC TTATCAGGCG ATGGTACATG AGTTGTTGGG TCTCAACAAT
CACCGTGTCA TTCTTCGCGG AGCTCCCAAC GTAACCAAAG ATCTCGAGGA AGTAGTTTTA
GCTGCATCGC AGGACGATTT TTTTCATAGA AACCGCCATA GCAATTTTGG AGAACTGGGC
GAAGCCATTC AAAAACTTTT GAAGGAATAC CAAAGTCAGA CGGCAAATCA AAGCTCGGCA
AGTCTCAATA CAATTGAAGA TATGCAGAAT TTTATGGATA AGTTTCCGGA ACTGCGCTCT
CGATCACACA ATGTGTCGAA ACACGTGGCC ATTATGGGTG AACTAGCTCG CCTAGTCGAA
GTTTGCTCGC TGATGGATGT GTCGCAGTTC GAACAAGAGT TGGCGTGTTC TGATGATCAT
AATACCCACT GGCGAGAGCT CATGGACAAG TTAGGGAGCA ATGCGGTAAA AGTCCCGGAC
AAGCTGAGGT TGGGACTGCT CTATGCCTTG CGCTACGAAA CATCAGCTAA TATACACATG
GTACAGTCAG CGATGGGTAA AGGCGGTGTA CCGCAGGATA TGGTGGATCT TGTGAATGTT
ATGCTACGAT ACGGTGGGGC AAAGTCAAGA GGACCAGGTT TATTCGGAAA CCACGATTTA
ATGAGCAAAA TGACCAAGAA TTTCATGACA AGTGTACAAG GCGTCGAGAA CGTGTATGCG
CAGCATGTTC CTCTTATCAT GGACACTGTC CAAACAGTTA TGAAGGGCAA GTTAGCGGCG
AGGACTCATC CTATTGTCCC TGGGTCTTGT ACAACTCGAC TACATGGTGA TACAGTCGTT
CCAGAAGAAA TTATTATTTT TATGGTGGGT GGTGTAACCT ATGAAGAAGG GACCAAGATT
GCCGAGTTCA ACATACAAAT GAAAGGACGT GTTCATGTGA TTCTCGGAGG TAGCACGGTG
CACAACAGCA CCAGCTTTCT GGACGAACTC AGGTCCACAT CGCTATAG
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| Protein sequence | MKVLLLDAVT TQVVSSVYSQ TEILNQQVYL VSRLDETGSH TNGSASVSKS HLKAVVFCRP
TQNNVNLIAK ELSQRPRFLE YHIFFSGILP SGLVRVLAES DRTERVRQVK EIYADFLPVN
EDLTSLQCRN TLAMTVAAGT SWAPKYAAQY ERNIQGLQSM LLALKRQPSC IRYAGHSACA
EELAKDMHDA IQADEIFHFR RSNAGGLLLL VLDRRDDPVT PLLSQWTYQA MVHELLGLNN
HRVILRGAPN VTKDLEEVVL AASQDDFFHR NRHSNFGELG EAIQKLLKEY QSQTANQSSA
SLNTIEDMQN FMDKFPELRS RSHNVSKHVA IMGELARLVE VCSLMDVSQF EQELACSDDH
NTHWRELMDK LGSNAVKVPD KLRLGLLYAL RYETSANIHM VQSAMGKGGV PQDMVDLVNV
MLRYGGAKSR GPGLFGNHDL MSKMTKNFMT SVQGVENVYA QHVPLIMDTV QTVMKGKLAA
RTHPIVPGSC TTRLHGDTVV PEEIIIFMVG GVTYEEGTKI AEFNIQMKGR VHVILGGSTV
HNSTSFLDEL RSTSL
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