Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATR_28245 |
Symbol | |
ID | 7204560 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011679 |
Strand | + |
Start bp | 549096 |
End bp | 551840 |
Gene Length | 2745 bp |
Protein Length | 768 aa |
Translation table | |
GC content | 49% |
IMG OID | |
Product | voltage activated chloride channel CLC7 type |
Protein accession | XP_002185725 |
Protein GI | 219120987 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.385606 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | AAGAGATTTC AAGACCGCTA CAAACTTTCA AATCGACAAT CACGATGAGT GGTCGACCTC CGCTTCCCAA ACGGCAGCAT AGTTATCATT TTTCCGTGAG CGCAGATGCT CTGGGCAGCA GCAGTGGTCA CGAAGGCGGT TCTGATCATC ACTATCATGA GCCCAGCATT GACTCTTTGA CCTACGTTGC TGATGAGTCC GATGCCTGGC GCGCGCACGA AGCTACCCAG CAGTTTCTGC ACCGGGGAAA GTTCTGGAAC AAGGGCAAAC ACGAGACGAC CCAACGGTAC TTTCTGATTT CGGCAATTGG AATTACGCAG GCGACCGTGG CCTACCTTAC CAATTTAAGC TCGTCCTACT TTATTAAGGT AACGTCGATG ACTGGCTTAC GAAGACAAGT TATGGAAAAA ACGAGCTCAT TCTTATTTCT GTTATTTTAT AGTCGAAATA TGGTCAAGTT TACGACTTGC TCGAACACGG TCATGTTGCA CACGCTTTTT TTCGTTTCTT ATTTATTCAA ACAGCCTTTG CCGCCGTAGC CAGTATCTTC GTTTGGATTG AGCCAGTATC AGCAGGTTCC GGAATCCCGG AAGTAAAGTG CTACCTAAAT GGCGTCGACT TGCCGCGGGT GGTAGACCCC AAGACGCTGA TCTGCAAGGT ACTCGGGGTG ATTTGCTCCG TCTCAGCCGG TCTCCCGGTG GGTAAGGAAG GTCCGATGGT ACACTCCGGA GCTGTCGTGG CCACGACCGT TGCAGCCGGT CGGACCCGGA ACGATGTACA AAAACGCGAT CTTGTGGCCT GCGGAGCTGC CGCTGGAGTG TGCACGGCGT TTTCAGCGCC CATTGGGGGC ATCCTCTTTG CACTCGAAGA AGGCGCGAGC TACTGGGCAC CCTCGCTCAC CTGGCGAACC TTTTTTTGCA GTATGATCGC ATTCACAACG CTGCTGGTTT TGAATACCAT CGGAACAACC TTTGGAAAAC TAGGCTTCAA CCGGCTATTT TCGTTCGGAA ATTTCCTGTA CGAAGGGCGG GAGTCCAGCT TTGCCGTCTA CGAGTTGGCC ATTTTTGTGT TGATTGGGGT GTTGGGAGGT CTGATTGGCG CCATTTTCAA CAACACCAAC GAGAAAATCA CACATTGGCG AATTAAAAAT ATCAACCACT CCAAGAAACG ACGTTTCGTG GAAGTCTTGT TGGTTTCCAT GCTTGTCTCC ACCATCTCAT TTCTGCTCCC GCTTTTATGG GGTCAATGCA AGGCTCTACC CCACGATCCA AACTTTTCTG AAAGCGAACA GGAACTTGTT GAAAGCCTGG TACCCTTTCG CTGCGTCGCC GGAAAAGAAT ACAACGAAGT GGCTTCTCTG ATGTTTACTG ATCCAGGAGA CGCTATTCGC CTACTATTTC ACATGCGCAA ACATGCCTTT AGTTTCGGTG CGTTGCTGCT CTTTTTCTTG TCCTACATTT CGCTCGCCGT TCTTGTATAC GGAATTGCGG TTCCGTCGGG ACTCTTTGTC CCTAGTCTCC TATCGGGGGC TGCTTTTGGG CGTCTCTTTG GAAACTTGGC ACTCCGGCTG TCCCCAAATC TGGCCTTTAG CAACACATAT GCATTGATTG GAGCGGCAGC AGTGCTAGGC GGTATGGCAC GCATGACCAT TAGCTTGACT GTAATTCTTT TGGAGTGCAC AGGAAATGAA CAATTTGTGC TGCCTCTAAT GTTGACTCTC ATGACGGCAC GCATTGTCGG TGGAGTCTTC AACGAAGATT TGTATCATAT TCACATTCAC CTCAAAAAAG GTGTCAATTT TCTGGAAGCT GAGCTTCGCT CGATCACCAG GCATCACAAG TACGTTTTGC GTCCTTCTTT ACATTTACTT CTGGATTTTC GTACCAAACG TAACCTTACA TGCTTGTTAT ATCCTAGTTT GATTGCAGGT CATGTTATGA GCCCCAAAGT CATTTTTGTG CGCCCTGTGG AAAAGGTGGG CGTTATCTAT GATATTTTGA AAAGCTCCCA GCATACCAAT TTCCCGGTAA TCGATACGGA AGACAATGGT GTTTTGTTCG GTACGATTGG CCGGAATGCT CTGTGCGTGC TTCTGAAATA CCGAGCGTTT GGGTTCCCCA AGAGCGAGTC TAGCGAAACT GGCAAAGGCA TGATCCAGAA CTACCTCAAG TTGGAATGCG ACGACGAAAA ATTCCTGCCT TTGGTACAGT GGGAGGTCTT GGAAAAGGCG TATCCCAAGT ACCCGTCCAT TTCGGAAATC CGAGTGAGCC GGGAAGACCG TGAGTGCCTG GTGGATCTTC GACCGTACGC CAACGTGGCC GCCATTACGG TTCCTGAAAC CGCGTCCATT TCGGTACGTA CCTCACGGAA GCGGGGCAAC CTCGCGCGGC CCTCTTGCTC TCACAACGAA CCGTGTACGA TATTGCGATT TTTGTTTATT GTTGCAGAGA ACATACCAGG TGTTCCGGAG TTTGGGAGTG CGGTTTCTGC CGGTGGTGAA CCGACACAAC CAAGTCGTCG GAACGATCAC GCGGCCAGAT CTGACTCCGG ATGCTCTCGC CGAGAAAATG ATTGGCAAGG GAAAGAAGTT ACAGTAGGGA AAATAGTGTC CTGTTTTTTG TTGTTGTGTA TTTGGAGTTT CAGTTCTGGA GAAAGCAGAG GGGGTGGTAG CCTTCCAATG TTTTCCTAGT TTTTGTTCCG TTTTTGTAAC TAACAGTAAA TTAGCCTGTT CACATTACTG CTGTC
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Protein sequence | MSGRPPLPKR QHSYHFSVSA DALGSSSGHE GGSDHHYHEP SIDSLTYVAD ESDAWRAHEA TQQFLHRGKF WNKGKHETTQ RYFLISAIGI TQATVAYLTN LSSSYFIKSK YGQVYDLLEH GHVAHAFFRF LFIQTAFAAV ASIFVWIEPV SAGSGIPEVK CYLNGVDLPR VVDPKTLICK VLGVICSVSA GLPVGKEGPM VHSGAVVATT VAAGRTRNDV QKRDLVACGA AAGVCTAFSA PIGGILFALE EGASYWAPSL TWRTFFCSMI AFTTLLVLNT IGTTFGKLGF NRLFSFGNFL YEGRESSFAV YELAIFVLIG VLGGLIGAIF NNTNEKITHW RIKNINHSKK RRFVEVLLVS MLVSTISFLL PLLWGQCKAL PHDPNFSESE QELVESLVPF RCVAGKEYNE VASLMFTDPG DAIRLLFHMR KHAFSFGALL LFFLSYISLA VLVYGIAVPS GLFVPSLLSG AAFGRLFGNL ALRLSPNLAF SNTYALIGAA AVLGGMARMT ISLTVILLEC TGNEQFVLPL MLTLMTARIV GGVFNEDLYH IHIHLKKGVN FLEAELRSIT RHHNLIAGHV MSPKVIFVRP VEKVGVIYDI LKSSQHTNFP VIDTEDNGVL FGTIGRNALC VLLKYRAFGF PKSESSETGK GMIQNYLKLE CDDEKFLPLV QWEVLEKAYP KYPSISEIRV SREDRECLVD LRPYANVAAI TVPETASISR TYQVFRSLGV RFLPVVNRHN QVVGTITRPD LTPDALAEKM IGKGKKLQ
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