| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_21083 |
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| Symbol | hCdc48 |
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| ID | 7204652 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011679 |
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| Strand | - |
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| Start bp | 415174 |
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| End bp | 418152 |
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| Gene Length | 2979 bp |
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| Protein Length | 806 aa |
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| Translation table | |
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| GC content | 52% |
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| IMG OID | |
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| Product | predicted protein |
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| Protein accession | XP_002185883 |
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| Protein GI | 219121314 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CGCAGGGATC AATCCCATCT CACTCGTTGG CTTGTCACAC GCACACACAA CAAAGGCATA
CACACGAAGG CAGATGGCGT AAGTGAATCG GAGCAATGGA GAGAGAGGAG TTGTAGCGAC
GATGCTGCTG GGGATCGTTT GTCTGTGAAT CAGGAAATTC CGAGATTTGT TTCTTGGTGC
CTGCCGTGTT CTTTGCATCC CTTACACTAG GTAGACACCG GCAATGAGTT CCGCAAATAC
CGACTTGGTA GATGACTAGT CACTGTTTGA TAGTGGGTAT GATGTAATCG AAGTTGTCGA
TCCGTCCGTA CATGTTTCTT ATACTTTCCA AGCCGGGTCA CATGAATCCC TCATTCTGTC
GCTTTCCTTT GCCATTTCAA TTGCAGCAAG GACGAAGAAA TGGCGGACGC CATACTCAGC
TCGGGAAGCA AGAAGCGCAG TCCCAACCGC CTCATAGTCG ATGACGCCAC CAACGACGAT
AATTCGGTCA TCTCCCTCTC TCCCGCAAAG ATGGAACAGC TGGAGCTATT CCGTGGAGAC
ACTGTCCTCA TCAAGGGAAA GAAAGGTCGA GATACGGTCT GCATCGTGCT TGCCGACGAA
ACCTGCGACG ACACAAACGT GCGCATGAAT AAGGTGGTGC GTAAGAATCT ACGCGTGCGC
CTCGCGGATG TTGTTACCGT CACGAGCTGT GGTGACGTGC CCTACGGCAA GCGCATCCAC
ATTCTGCCCC TGGACGACAC AATCGAAGGC GTTTCGGGAA ACCTGTTCGA TGTCTATCTC
AAGCCCTACT TTTTGGAAGC CTACCGTCCC GTCAAAAAGG GGGATCTCTT CCTGGTTCGC
TCCGCCATGC ACCCGGTAGA ATTCAAGGTT GTCGAAACGG ACCCGGCACC CTATTGTATT
GTCGCACCCG ACACCGTCAT CCATTGTGAG GGTGACCCGG TCAAACGTGA AGACGAAGAA
AAGATGGATG ACGTGGGTTA TGACGATGTG GGTGGTTGCC GCAAGCAAAT GGCGCAGATT
CGGGAAATGA TCGAGTTGCC CTTGCGTCAT CCGACTCTCT TCAAGACACT GGGTGTGAAG
CCACCTCGCG GTGTCTTGCT GTACGGTCCT CCCGGCTCCG GAAAGACTCT CATTGCTCGG
GCTGTTGCCA ACGAAACCGG AGCTTTTTTC TTTTTGATCA ACGGGCCCGA AATCATGTCC
AAGATGGCTG GTGAATCCGA ATCGAACTTG CGCAAGGCTT TTGAGGAAGC AGAAAAGAAT
GCTCCTGCCA TTATCTTTAT CGACGAGATT GACTCCATTG CGCCCAAGCG TGAAAAAACC
AATGGCGAAG TCGAGCGTCG TATCGTCAGT CAAATGCTGA CGCTCATGGA CGGCCTCAAA
CAGCGCGCCA GTGTTGTTGT CATTGGGGCA ACCAACCGCC CCAACGCCAT TGACCCGGCC
TTGCGCCGTT TCGGGCGTTT CGATCGCGAA ATTGATATCG GCGTGCCGGA TGAGAATGGT
CGTCTGGAAG TCTTCCGCAT TCATACGCGA AACATGAAAT TGGACGAAGA TGTGGAACCG
GAGGCGATTG CGCGGGAAAC GCACGGCTTT GTTGGGGCCG ATATCGCCGC ACTCTGTACC
GAAGCTGCCA TGCAGTGCAT TCGTGAAAAG ATGGATTTGA TCGATATCGA AGATGAACAG
ATTGATGCGG AAATATTGGA CAGTATGGCC GTCAGTCAGG ATCATTTTCG ACATGCATTG
GCGCAGTCGA ATCCGTCTAG TTTGCGTGAG ACGGTGGTCG AAGTCCCTAA CATTTCTTGG
GAGGATATTG GTGGTCTCGA GCAAGTCAAG GTATGTTTAC CGGATCAAAC GGAGGAAACT
ACTGCCTTTT GTGTGAGTTT CATCGTTTTC TAACTCCGCT TCTCACTTTT GTCACGACAG
CGCGATCTCA AGGAACTTGT TCAGTACCCT GTCGAGCATC CCGAAAAGTT CGAAAAATTT
GGAATGTCAC CTAGTAAAGG TGTTCTCTTT TATGGTCCTC CTGGTTGTGG TAAAACTTTA
ATGGCCAAAG CTGTCGCCAA CGAGTGTCAG GCCAATTTCA TTTCCATCAA GGGACCTGAG
CTGCTTACCA TGTGGTTTGG AGAAAGTGAA GCAAACGTTC GCGATGTGTT TGAGAAGGCC
CGTCAAGCCG CTCCATGCGT GCTCTTCTTC GACGAACTCG ACTCTATTGC CCAGCAGCGT
GGAGGGAGTC AAGGAGACGG TGGTGGTGCC GCCGATCGCG TCATGAACCA GCTTTTGACC
GAGATGGACG GTGTTGGTTC GAAGAAGAAC GTGTTCATCA TTGGAGCGAC TAATCGTCCC
GATATCATCG ATACGGCTTT GATGCGTCCC GGACGTTTGG ACCAGCTTAT TTATATTCCG
ATGCCCGACT TTGAGTCGCG CTTGTCGATT CTTCGCGCGA CGCTTCGCAA GAGTCCAGTA
TCGAAGGATG TTGACCTGAA CTACCTTGCC TCGCAAACCG ATAAGTTCAC CGGTGCCGAT
CTTACGGAGA TTTGTCAAAG TGCGTGTAAA ATTGCCATTC GAGAAGAGAT CGAGCGGGAC
ATTGAACGTC AGCGCATGAA GCAAGAAGCC GGCGAGGACA TGGACGACGA AGATGACGAG
GTTGAAGATC TCATGCCGGA GATATTGCCA AAGCACTTTG AAGTCTCCGT TCGCAATGCG
CGTCGATCTG TCTCGGACCG CGACCTGGCC CAGTACGCTT CCTTTGCGCA GACCTTGCAA
CAATCACGGG CAGCCGTTTC GGGATCGACC GGTGGCAGTC TCGCAACTTT TGCTTTTCCG
GACGCTAACG CGGCTGTTGG CGTTGGAGCG GCGGCGGAAG ACGACGATGA TGAGGAAGAC
CTCTATAGTT AGATGAGACA GGTCAAGCCC GGAACGGCGA AGACAGGCAC GTCCATAATA
ATCTAACCTT AAAAGTTGAA AAAGAGATGT ATGTATGCA
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| Protein sequence | MAKDEEMADA ILSSGSKKRS PNRLIVDDAT NDDNSVISLS PAKMEQLELF RGDTVLIKGK
KGRDTVCIVL ADETCDDTNV RMNKVVRKNL RVRLADVVTV TSCGDVPYGK RIHILPLDDT
IEGVSGNLFD VYLKPYFLEA YRPVKKGDLF LVRSAMHPVE FKVVETDPAP YCIVAPDTVI
HCEGDPVKRE DEEKMDDVGY DDVGGCRKQM AQIREMIELP LRHPTLFKTL GVKPPRGVLL
YGPPGSGKTL IARAVANETG AFFFLINGPE IMSKMAGESE SNLRKAFEEA EKNAPAIIFI
DEIDSIAPKR EKTNGEVERR IVSQMLTLMD GLKQRASVVV IGATNRPNAI DPALRRFGRF
DREIDIGVPD ENGRLEVFRI HTRNMKLDED VEPEAIARET HGFVGADIAA LCTEAAMQCI
REKMDLIDIE DEQIDAEILD SMAVSQDHFR HALAQSNPSS LRETVVEVPN ISWEDIGGLE
QVKRDLKELV QYPVEHPEKF EKFGMSPSKG VLFYGPPGCG KTLMAKAVAN ECQANFISIK
GPELLTMWFG ESEANVRDVF EKARQAAPCV LFFDELDSIA QQRGGSQGDG GGAADRVMNQ
LLTEMDGVGS KKNVFIIGAT NRPDIIDTAL MRPGRLDQLI YIPMPDFESR LSILRATLRK
SPVSKDVDLN YLASQTDKFT GADLTEICQS ACKIAIREEI ERDIERQRMK QEAGEDMDDE
DDEVEDLMPE ILPKHFEVSV RNARRSVSDR DLAQYASFAQ TLQQSRAAVS GSTGGSLATF
AFPDANAAVG VGAAAEDDDD EEDLYS
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