| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50978 |
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| Symbol | sCdc48 |
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| ID | 7201729 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011678 |
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| Strand | - |
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| Start bp | 857569 |
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| End bp | 861072 |
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| Gene Length | 3504 bp |
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| Protein Length | 930 aa |
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| Translation table | |
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| GC content | 52% |
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| IMG OID | |
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| Product | predicted protein |
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| Protein accession | XP_002181088 |
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| Protein GI | 219120710 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTTCCGTCAG TGCACCAACA AGCCAACAAG CTTGACATAT TCCCAAGGGT ACACAAACCT
CCATACAAGA GCGTAGAGGC AATCTCGGAT TGATTGACTG TAAGAAATCG GATTGATCGG
TGTTTGTACC CGTGAAAGTA CATTTATTGA CAACTTCTCC CCGTACGCTA TCCTCCCCCT
GAAGGACTCG TTCGCTTACC AACACTTTAA GAACGTGATT ACTGTTAGTG GGTTTCCGAA
CGCCCATCAG GAACCAAGTC TACGCATCGG TTCAAGGAGT GAACGCGGAC GGCAGTTTAT
TACGTTTCTT GATTGATCGA ACGATTGATT GATTGAAGTT TTTGAACGAT CGAAATCAAT
TTGACGCACG GTCCCTTTTA GTACGCGCAC ACTCTCACAC ACACAATCAC ACATCTGCTT
ACCATGGTCT TTTCGAGACC ATGCCTGCTG GTACTGGCAG TGCTGTCCTT GGCTCGATCG
GCGGGGGCCG TATGGGCTCC CCGCAGCATC CCATTGCTGA CGACGTCCTG GGCTGCCACC
GCACAACGAC GGGATCTTAC GACAGCCGCC TGGGGTGTGA GCGAAAGCGT GACGGCTAGT
TCAATACTTC GTGGAGGTTC CACCGGTACG TGATCGTGAT TGAGATCTTG GAATTGGCGT
ATGACATTCG TGGAAGCAGG CGCACGGGTG CAAGTGGGAC CGTGGCGTGT CCACCTCAAC
TAGATACCAT CTGAGGTAGC GGCAAGACTT TCTCCAAAAT GTACTATACT GTACTGTACT
TTGCATAGAT GCGTGCCAAA CGGTTTTTTC AATCCGTATG CATCGCCAAG TCCTCCTCAC
CTATGCTCTG CTGTGGTCTT CTTATTGTAG CTGCTGCTGC GGATGACGAC GAGGACGTAC
GGAAATCCAA AAAGTCGTCC TCCAAAAAGA AGAAAAAGAA AAAGTCCAAA AAGGATCAAG
TCTCCGAGCC CCTTTCGTCG AAAGCCGCCG CCTCACCCTT TGCCGATCCC ACCAAAAAAC
CGGACCTCTC CACTGCCATT CTGGGTGGTG CCGAAGGACG CAGTGCCATG CAAGTCTTTG
CGTACGACAG CGAAGAAGGA CATTCGGTCG TCGGCATGAC GGAAGCCGCC TTGGAAGAAA
TGGGGCTCTT CGAAGGCGAT ACCGTATCCA TCAAAGGCAA GCGCGGCAAG AAAACCGTAG
CCAGTGTCGC CATTGTAGCG GATGTCGACG TTAGCGCCTT GCAAGACGGC GCCGGTCAAC
CCTTGCAGTC GATCGGTATG TCGCTGGACG CTATGAAGAA CGCCGCCGTC CGCGCTGGTG
ATACCGTCAC CGTCGTCCCC GTCCCCAACG TCAAATTTGG CAAGGCCGTG CTCATTCTAC
CCTACCAAGA TTCGTTGGCT TCGTTGGGTG TGGAGGACGC CAACGTGTTT GATGATTACC
TGAAACCATA CTTTGAAGGA AAATTCCGTT CCCTACATCG CGGGGACTCC TTTCATGCGG
ATGGACCCTA CGGAAAATTG GAATTTCAGT GTGTCGAGAT TGATTCCGTC GAAGTCGATG
GCGATACGGC TTGCGTCGTG GTAGATGATA CCGTCATTGA ATGCGACGGT GAACCAATTG
ATCGTAGCGA CCACGATGAC TTGGAAGGTG CCGGGTACGA CATGATTGGG GGAGCGAGCA
AACACTTGGC CGCCGTCCGT GAACTAGTGG AACTACCACT CCGCCACGCC GAATTGTGGC
GCAAGTTGGG AATTAACCCA CCGCGAGGCG TCCTGCTGAC AGGACCGTCG GGATCCGGTA
AAACTGCTAT GGCCCGCGCC GTCGCCGCCG AAACCGGAGC CTACTTTTTC GTCATCAACG
GACCCGAAGT AATCTCCAAA CGGGCTGGCG AGAGTGAAAC CAATCTACGC CGAGCCTTTG
AAGACGCGGA AGCAAATGCA GATGACTACA ATGGTGCCAT TATCTTTATT GACGAAATTG
ATTCGATTGC GCCCAAACGT GAAAAGGCTG GTGGAGAAGT GGAAAAGCGT GTCGTGTCGC
AGCTTTTGAC CCTGATGGAC GGGCTCAAAC CCACGTCGAA GGTCGTTGTT ATGGCAGCAA
CCAACCGTCC CGGTGTTATC GAACCGGCGC TTCGTCGTCC GGGTCGCTTC GACCGCGAAC
TCGACATGGG CATTCCCGAC GAGCAGGGCC GCCTAGAGAT TCTGCAAATC AAAATGCGCG
ATATGCGTTT GTCAGACGAT GTCGACTTGG AACTGTTGGC ACGGAACACC CACGGTTACG
TCGGGGCGGA TTTACAACAG CTTTGTATGG AAGCCGCTCT GGAATGTATT CGGGGAAAGA
TGGGATTGAT CGACTTTGAT AAAGACCAAG TCGACAAAAA GATTCTGGAT TCGATTGTGA
TCGAGGAAAA GCATTTTGAT CACGCCATGG GCATTGTCGC TCCCTCCTCG CTGCGTGAGA
GTCAAGTAGA AATCCCCGAC GTACACTGGG ACGATGTCGG TGGACTGGAG GATGTAAAGC
GAGAGCTACA CGAGACGGTG CAGTACCCAG TGGAACACGC CGAAAAATAC ATCAAATTCG
GTATGAGCCC CAGTAAAGGT GTTTTATTTT ACGGCCCTCC TGGTTGCGGA AAGACTCTCT
TGGCCAAGGC GATTGCCAAC GAATGCGGGG CCAACTTTAT CAGCATCAAG GGACCGGAGC
TACTGACACA GTGGTTTGGA GAGAGTGAAG CTAACGTTCG TGAACTCTTT GACAAGGCCC
GTGCCGCGAG TCCTTGTATT CTCATGTTTG ACGAGATGGA TTCGATTGCC AAGACTCGAG
GTAGCGGAGG CGCCGGAGGA AGCGAAGCGG GAGACCGTGT TATCAATCAG ATTCTAACCG
AGATTGACGG TGTTGGAGCA CGGAAAAACG TGTTTGTCAT TGGTGCTACC AATCGACCGG
ATATTCTCGA CCCAGCCGTC ATTCGTCCAG GACGCCTTGA TCAACTGATT TATATTCCGC
TGCCAGACTT GAAGAGCCGT ATCGCTATTT TCCAAGCGGC ATTACGAAAG GCACCCATGG
ACCCCAACGT TGATCTGGAA GTGCTGGCTC GATCAACACA CGGATTCAGT GGGGCTGATA
TTTCCGAGAT CTGCACAACG GCTTCGAAGC TTGCTATTCG CGAAGCGATT CTGGCCGCGG
AAGAACGAAA CAAGAAGATC GAAGAAGGCG AAATTGACGG AGACGAAGGT TCGTCGGAGG
TCGGAGGCAA TATGCTGATT ACGAAGAGTC ATTTCAATTT TGCCATGAGC CGAGCCCGCC
GAAGTGTAAG CGAAAAGGAC TTGACACTGT TTGAAGAATT TGCAGAAAAG CAAAAAGCCG
GACGTGGCGA AGCAGCGAGC AACTTTAAGT TTGGCGACGG ATCCACAGCC GACGAAGATG
ACGCCGACAA TGGCTCTCTA CAAGACGACC TGTATTCCTA AAGATAATCG CAATACTCCC
TTTACAGAAA ATAGATTCAA CTAG
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| Protein sequence | MVFSRPCLLV LAVLSLARSA GAVWAPRSIP LLTTSWAATA QRRDLTTAAW GVSESVTASS
ILRGGSTAAA ADDDEDVRKS KKSSSKKKKK KKSKKDQVSE PLSSKAAASP FADPTKKPDL
STAILGGAEG RSAMQVFAYD SEEGHSVVGM TEAALEEMGL FEGDTVSIKG KRGKKTVASV
AIVADVDVSA LQDGAGQPLQ SIGMSLDAMK NAAVRAGDTV TVVPVPNVKF GKAVLILPYQ
DSLASLGVED ANVFDDYLKP YFEGKFRSLH RGDSFHADGP YGKLEFQCVE IDSVEVDGDT
ACVVVDDTVI ECDGEPIDRS DHDDLEGAGY DMIGGASKHL AAVRELVELP LRHAELWRKL
GINPPRGVLL TGPSGSGKTA MARAVAAETG AYFFVINGPE VISKRAGESE TNLRRAFEDA
EANADDYNGA IIFIDEIDSI APKREKAGGE VEKRVVSQLL TLMDGLKPTS KVVVMAATNR
PGVIEPALRR PGRFDRELDM GIPDEQGRLE ILQIKMRDMR LSDDVDLELL ARNTHGYVGA
DLQQLCMEAA LECIRGKMGL IDFDKDQVDK KILDSIVIEE KHFDHAMGIV APSSLRESQV
EIPDVHWDDV GGLEDVKREL HETVQYPVEH AEKYIKFGMS PSKGVLFYGP PGCGKTLLAK
AIANECGANF ISIKGPELLT QWFGESEANV RELFDKARAA SPCILMFDEM DSIAKTRGSG
GAGGSEAGDR VINQILTEID GVGARKNVFV IGATNRPDIL DPAVIRPGRL DQLIYIPLPD
LKSRIAIFQA ALRKAPMDPN VDLEVLARST HGFSGADISE ICTTASKLAI REAILAAEER
NKKIEEGEID GDEGSSEVGG NMLITKSHFN FAMSRARRSV SEKDLTLFEE FAEKQKAGRG
EAASNFKFGD GSTADEDDAD NGSLQDDLYS
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