| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_46595 |
|---|
| Symbol | |
|---|
| ID | 7201868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011678 |
|---|
| Strand | - |
|---|
| Start bp | 850342 |
|---|
| End bp | 852117 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002181085 |
|---|
| Protein GI | 219120704 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0322262 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAAGCACGCA CGGCACGACG AGAAACGCAA ATCACTCAAC TCGACCTTCA CGCGTGTATA
ATACACGACG TTGACGGCAC CAACACATTC GGAGTCTCGA GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGC CATTCTTGGT CGGAAGGGGG GAATGTACAG TAAGTGATTG ACTGTGAACA
AACACCCGAA CCCATTTGGA CTTGTACTTG GTAGTCACTC GATCGAGAGA GAACTTTGGC
AGTAGTCGTA GTCGTTCCCC CATTCTTCCA ACACCACCAT CGGCATGACG ACAATAACAA
CATCCGATTG GAGTATTGCA CCCGGGAGTT TCCGAGACTA TCCTCCCTCT CCGGTACTGT
GGTTGACGGG AGCCGTGGAT CTCTTTTGTT GGCCTCTCGG CTGTCTCGAC TGGCGTGACA
CTCTCAACGT GGCCGTGCCC GCCGATGCCG TTCCACCTCT ACCTTCGTGG TTGTCCTACC
AAGTACCCTA CATTTACCAC CATTTGCCAC CCATGTTGAG TTATCGAGAC TTTCTCGCAA
CGACACCAAC CACAACCGCA CCAACGCAAC CCCACCACCA GCAACATCAG ATCATCCGCA
CCGTACACCT GCTCTACACC TACGCCTTTC GGACAACCTC CACGGCACTC GCCAATCTCG
CCACACCCGA AGCCTGGCTC GTATTGTTCG CACTGGTACT CCTACTCCGC ATGATCAAAT
CCGTACTCAT GCCCCGCTTT CGACAACTGG GGGTCAAGGC TGGCCGACAA ACACACGGCG
AAGCATGGTT GCAACACAAT CAGGAACGTA TCCACAAGTT CGGCGAGTAC GTCTTTCGAT
TGCTCTACCA CAGCGTCATT TCGGTATACG GCGTCTGGTA CTTTCACGAC AAGCCCTGGT
GGCAGATATT CGACGGTTAC GCCGCCACCA AGAAGGCTAC TTTGACCCTC TTTCTCGGAT
TCCCCCACCA ACCCGTGGAC CCGGGCATGA CCTGGTATTA TCTACTCCAG GCAGCCTACA
ATATCGATGC CCTCGTCACA CTCCTAGAAA TATCATTCAC CGTGCGTCTT CGTCACGTCT
ATTCTCGCCA CTCGGACGGG AACGGGCGGT GGCAGTCGCC CGTCGTTGTG GCCTGGAGTC
CGTCGGTTCG TGGTGATTTT CGCGAAATGT TCATCCATCA CGTCATTACC AATTTACTCG
TGATCGGTTC CAGTATGTGT CGATTGACCC GCGCGGGCAG TATGATCTTC ATGGTCCACG
ACCTTTCCGA CGTGCCCGTG GATCTCTCCA AACTCGCCAA CTTTTTGAAG AAAAAGTGGA
CCACGCTCAC CTGTTTTGTC GCCATGGTGC TGGTTTGGTT GGCCACGCGA TTGTGCATTT
TGCCCTTTGT CATCTACGCC GCCATGTGGA CGCAATCGCA GTACGTCACG CAAGGTATAC
CGGTACTCTT GTTCCTCTAC TATCGCGACA TCTTTCTGAT CCTGGTCGGC TTATTGATCG
GGCTACACAT TACTTGGTTC GGAATGTTTC TGCAAATTTT TGGCACATTT TTACGCAAGA
ACGAATGCCA CGACTTGTCC GAACACAAGT CGGGAGAAGA ACAGCAGAAG AGTGCGGCGC
CAGCTTTTTC GGTCGGGGCC GGTAGAGAGA ACCCTGCCAA GTCGAGTAGC GCGGACAACG
ACCAACGGAG GCCGACTGTC CGGTACGACG AGAAAAAGGA AGATTAACGA ATATTCCAAT
GGGACGGCAA CTTAGAAGTA GGCAGCGTTA CCAATT
|
|---|
| Protein sequence | MTTITTSDWS IAPGSFRDYP PSPVLWLTGA VDLFCWPLGC LDWRDTLNVA VPADAVPPLP
SWLSYQVPYI YHHLPPMLSY RDFLATTPTT TAPTQPHHQQ HQIIRTVHLL YTYAFRTTST
ALANLATPEA WLVLFALVLL LRMIKSVLMP RFRQLGVKAG RQTHGEAWLQ HNQERIHKFG
EYVFRLLYHS VISVYGVWYF HDKPWWQIFD GYAATKKATL TLFLGFPHQP VDPGMTWYYL
LQAAYNIDAL VTLLEISFTV RLRHVYSRHS DGNGRWQSPV VVAWSPSVRG DFREMFIHHV
ITNLLVIGSS MCRLTRAGSM IFMVHDLSDV PVDLSKLANF LKKKWTTLTC FVAMVLVWLA
TRLCILPFVI YAAMWTQSQY VTQGIPVLLF LYYRDIFLIL VGLLIGLHIT WFGMFLQIFG
TFLRKNECHD LSEHKSGEEQ QKSAAPAFSV GAGRENPAKS SSADNDQRRP TVRYDEKKED
|
|---|
| |