| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_46438 |
|---|
| Symbol | |
|---|
| ID | 7201793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011678 |
|---|
| Strand | + |
|---|
| Start bp | 340064 |
|---|
| End bp | 342003 |
|---|
| Gene Length | 1940 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180806 |
|---|
| Protein GI | 219120121 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAATGCGAAT CTTACTCTCG GGGACGACGA CGGTTGTCTG CTGAATGAGC AGTACCTGCT
GGTTTGAAAC GCTTGGCGTG CTGATCATCT GCTGCTTTGA GCAGACAGAC AGTTGAAAAG
ATGAACATCC TTTTTTCAAA GCCTGATTGG TTCCGTGTGC TGTTGCTGTC GGCACTAGCG
CTGAGGTGTC GACCCGTGGA AGCCGTTCCC GGCCAAACCT TGGTGCACCT GGTGCAAGAT
ACGCTCTACA ACTTACGGAA CGAAGACAAT TCCAACCTGG TGTATTCGTC TATCGTTGCA
TTCTTGTTGA TGGTGCTACT GCAGAGATTC TATCGGCACC GGGCTATGCT TTGTTACGGC
ATGCCGGTTA TGACGCACCC TCCGCAGGGA CGACCATGGC CATTCCTGGG ACACGCTCTA
AATTTCCTGA GTTACAGACC ATGGGATTTG CTGATGAGCT GGCACAATCT CTACGGCCCA
ATCGTCTGCT TCGACCTTTT GGGATCAACC ATGTTCAGTC TAGCATCGCC CAGTCTCCTC
AAGCTAGTGT TGCAGTCCAA AATCCAGTCG GTCAAGAAGG ATATAAGCAA CACCATGAAG
CACTTTATAG TTATTCTTGG CACCGGCATT GTTACTTCCG AAAATCAGTC CTGGATTAAA
CAACGACTCA AGATGAGCCA TCCTCTCCGC GTCGAAGTTC TCGAAATGAT CCCCCGTCAA
ACATTGCTTG CGGTCCAACG CTGGATGACA AAATTGGATG CAGCTTGCGA GACACAGGAA
TCGGTTGAAG TGGGATCGTC CTTGAGACAT TTGACGCTAC AGGTTATTTC TGGAACTTTC
TTGTCCCTGT CGGCAGAAGA ATCCGACTCG ACGTTTGCAA AGATGTACCT ACCCATCGTT
GACGAATCTA ATCTGCGGGT TTGGCACCCT TACAGAGCTT ACCTCTTTAT GCTACCGGTT
TTTTGGAAGT ACCTGTGGAA TGTACATAAC TTGAACAGGT ACGTGTCGCA CTTGATTCGG
GTTCGATGGC TGGTTCGTCA ACAGGAACGT ATCAACGGCG GATCGGTCCG AACCCAGGAT
ATTTTGGACG GCGTCTTGAA GGCACACGAG AAAGAATTTC CGCACCAGAT GAACCTACCA
GAAATGGCGG TGCGTCAATT TAGAGATGAA ATGAAAACTT TTATGTTGGC AGGTCACGAA
ACTTCCGCAG CTATGATGAC ATGGACACTG TATGAGCTGC TGGCCAACAC GGCATTGATG
CAACGGGTTT CTGAGGAAGG CGCGTCCTTG TTTGCGCGGA ATGTGGACTG GAGTAGGGCG
GGAGCCGATG AATTACCTTC GAACGACCAG TTGAAGCATT TGATACTATC AGAAGCCTGT
TTAAGGGTAA GTCTCACTGC ATTCGCTACG GACTTGGAGA ATAGAGTTTC GCTTTATGAT
GTGCTCACAT GTCCTATTCT TAAAGGAATC TTTGAGAAAA TACTCTGTCG TTCCAATCGT
TGCGCGACGA ACGGTTGAAG ACTTATACCT AGAGGACGGC AAGTACTTTA TTCCGAAGGG
CAGCTCGTTT TTGATCAATA TTCAAGCTAT TCACCATGAT CCAAACCTGT GGCCCAATCC
AATGAGATTC GATCCTGATC GATTTGTGGA TGGGGAAATT GTCCCATACA CTTTTCTTCC
TTTTATCGCG GGCCCTCGGA ATTGTTTGGG GCAGCATTTG GCACTGCTTG AGAGCAAAAT
GGTAATTTCG TTGCTCGCGC AACGCTATAT TTTCTCGCTC GGAGAAGGCG CTACGTTAGA
AGTGGACGAC TGGGAAAACG ATAAAGACCC TAGGCATCGG TTTATGGTCC CTGTTGTTCC
CAAAGAGGAG CTCAAAGTTA CCGTTCAAAG GAAGTAAAAT GATTACGCTA ATTCTTAGGC
TAACGGACGA GAAATCTTTT
|
|---|
| Protein sequence | MNILFSKPDW FRVLLLSALA LRCRPVEAVP GQTLVHLVQD TLYNLRNEDN SNLVYSSIVA
FLLMVLLQRF YRHRAMLCYG MPVMTHPPQG RPWPFLGHAL NFLSYRPWDL LMSWHNLYGP
IVCFDLLGST MFSLASPSLL KLVLQSKIQS VKKDISNTMK HFIVILGTGI VTSENQSWIK
QRLKMSHPLR VEVLEMIPRQ TLLAVQRWMT KLDAACETQE SVEVGSSLRH LTLQVISGTF
LSLSAEESDS TFAKMYLPIV DESNLRVWHP YRAYLFMLPV FWKYLWNVHN LNRYVSHLIR
VRWLVRQQER INGGSVRTQD ILDGVLKAHE KEFPHQMNLP EMAVRQFRDE MKTFMLAGHE
TSAAMMTWTL YELLANTALM QRVSEEGASL FARNVDWSRA GADELPSNDQ LKHLILSEAC
LRESLRKYSV VPIVARRTVE DLYLEDGKYF IPKGSSFLIN IQAIHHDPNL WPNPMRFDPD
RFVDGEIVPY TFLPFIAGPR NCLGQHLALL ESKMVISLLA QRYIFSLGEG ATLEVDDWEN
DKDPRHRFMV PVVPKEELKV TVQRK
|
|---|
| |