| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_46392 |
|---|
| Symbol | |
|---|
| ID | 7201648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011678 |
|---|
| Strand | - |
|---|
| Start bp | 202318 |
|---|
| End bp | 204176 |
|---|
| Gene Length | 1859 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180961 |
|---|
| Protein GI | 219120446 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTC CAATGGTAAA TCGAAACGGC TTGGGACTGC ACAAGGACAC CCGTAGCCGC
CTTGGGAAAG GGTTTCCCGT GGGATCGAAT CACCCGTTAA CGCTGTCTGA AACGCACCTC
TATTTCGTGA GAGCGTCTCA ACGTTTGATT GGAATGAGAC GAAGTGGCGA GGAAAAGGTA
CTTGGAGCAG ATCCGTTCAC CTATCTTTGA GTCGGTTCCT GCCGTATTGG CTTGGACTTA
GACTGCAAAA AGTGGGAATT GTCGGTTGAA ACGGCGACGC ATCGTATGAT TTGACTCGGT
ATGATTCCAT CCTATCTGTA TACATTTCAA ACGATTGTAT TAGCTCGTCT GGCGCGGAGA
CCGTTGAATT TAGCGAAGTA GGGGCAATAG ACTCCGACCT CCTATCGTCG AACGCCGATT
CAGGAATTTG GGCGCGGACA CGCAGTGGCG AGGGATATAC CGGTACTACC TTTCAACGGA
TATTTCAGTT TGAAACTCAT ATGTGAGGTC ATGTATAATC TAAATGAAAC TCGGTTTGCG
TGATAGATAT TTCGAATGTT TGAATATTGA AAATCTCGAC TAATCGAACT TCATCGACTG
TGACCAAAAT TTACTATTGG CAGAACATCC GCAATTCGTG TCGTGTGAGA CTTATCTAAA
CTGGGATACC TACACCGCTG TAGGGGGAAA CAGTAAGTAG CACTAGATCG GGGATAGCCG
AACATCGGTA ACAGACCCTG AAGACATGCG CTTCTGACCC TGGACCGATG TCATTTGTCA
ATATCGTTAC GACCCAGAGG GCTGAACACG TTCAGAATTC CTGTACGGAC GCGAAAGAGT
CCAAGAGTCA CACAAAAATG GGAGGCTCAT CCGAACTACT CAGGGCTTTG AATGCTCCGC
CCTTGGTGGC TGCAACAGGT ATTGTCGTCC TTTCGTTGAT GCCGGTCGTG GAACAAGCAA
TTCTGGAGGG TAAAATCGCT TGGCCTGTCG TCAAAGCTTT AAATCTGCTA TCCTACGTGC
TCAATTTTGT GGCTACGCAG CAACCTGGAC GCATTGATGG GATACGGCAA GACAAAAAGA
CGAGCACAGC TAGATCAAAG ATACAGAAAG AATCTTCCCG CGATCAAGCC GACGTGGAGA
TCTACTTGGC CGGTCGTCGC GGGAAAACCT TACTTGCTCC ATCCGGTTGG GCCTTTGCGA
TTTGGGCTCC CATCTTTTTG GGTGAACTTG CTTTTGTTAT GGCATCGCTC TTTTTGAAAG
AAAAATCTTT GGAAGCAGCT GTCGTAAAGC AATCCTCGGG AGGCTTTGTT GCCTCGCAAG
TCTTTCAGGC CCTCTGGACC GCTTCATTTC GGCCGCGGTA TCGAGGCAAC GCTATTTTCA
TTTCGGGTGC AATGTTGTCG GCAATCGCCT ATTCGTTATC CCAAGCCCAT CGTAGAATCG
TTCAGCTCTG CTCCCATCAA AAAATGAGCG TTGTTTCTTT CCTTGTGTTC GTCCTACCCA
TCGCCTTGCA TTTCGGTTGG ACTACTGCCG CGGCTTTGGT AAACTGGAAC GGCAGTGTGG
CTCAAAGAAT CGGAACTCCT CTGGCAACGG CTGGTGTGGG CTACATTTCT GCAATCGGGG
CGACGGTCCT GGGTATCTAT TTAACACGAA CCCGTTCCGC GCCAACTGTT GGGGCAGTCT
TGGCGTGGGC ACTGGCAGCC TGTGCTACCG GAATGACCGA ACGATTGCAA TCAACCAAGA
GGGAGGAGAA AAACCGAGCC GGTGTTTACG GTGCGCGGAC TCAACGCTTA TTGTGCGGGA
TTGGATCAGC TCTATTAGCG GCAAACTCTA TTCTGACCTT CGTTCGGATA TATTACTAA
|
|---|
| Protein sequence | MTAPMVNRNG LGLHKDTRSR LGKGFPVGSN HPLTLSETHL YFVRASQRLI GMRRSGEEKG
ETTLKTCASD PGPMSFVNIV TTQRAEHVQN SCTDAKESKS HTKMGGSSEL LRALNAPPLV
AATGIVVLSL MPVVEQAILE GKIAWPVVKA LNLLSYVLNF VATQQPGRID GIRQDKKTST
ARSKIQKESS RDQADVEIYL AGRRGKTLLA PSGWAFAIWA PIFLGELAFV MASLFLKEKS
LEAAVVKQSS GGFVASQVFQ ALWTASFRPR YRGNAIFISG AMLSAIAYSL SQAHRRIVQL
CSHQKMSVVS FLVFVLPIAL HFGWTTAAAL VNWNGSVAQR IGTPLATAGV GYISAIGATV
LGIYLTRTRS APTVGAVLAW ALAACATGMT ERLQSTKREE KNRAGVYGAR TQRLLCGIGS
ALLAANSILT FVRIYY
|
|---|
| |