Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_46077 |
Symbol | |
ID | 7201425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011677 |
Strand | - |
Start bp | 170109 |
End bp | 171667 |
Gene Length | 1559 bp |
Protein Length | 343 aa |
Translation table | |
GC content | 51% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002180587 |
Protein GI | 219119664 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00656632 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | CACGTGTGCA GAATTCGCGG AGCAACTTTC TATTGACAAC GGTCGGTCCC GGTAACGTGC CCTTACTGGT AACAGCCGAT CATTTCGTTC CGGTTTGATC ATTGTCGTGG CCAGGAAAGT AAGCACGACT TGATGTGTGT ATTTCTGACA ATTTTTCTGG ATAAATCAAT CCAATCAAAC GTATTCTTGG TGCGTCGTGC GACTGTGCTC ACGGTTACAG ATCTAGTCAT TTTCAGTTCG ACAAGCCGAG AATCACGTCT CGAACGGTCA CTTCCTGTTG TTCCGCCGCA CCACTCTAGA GCCCTCCGTA CGTACGACTC CTGGAAAGTG TAAGAGAGTA ACCTTACCCG ACTCTTTTAC TGTTTGTTGA GCTGTGTCTC GTATCAAGAA TCGCTCGGTT TCTAGGCTCG CCATTCTCGC GGCGCGCTTT ACGTTCCGGC CAACCGCTTG AGAGCAGCCG TAGACCAACA ATCGCCTTGG GATCCTTCGC CCACAATCGA ACTACGATAC CGTCTGTCCA ACGAACCATG GATTTGTTTT TGTTCACAGT CTCCGCAGCA GCCTATCGTT ACCACATTGG CTGGAATAAA ACGAAGTTTT TCCGAGGGAT TTCTTACGCA ACGTTGTCGA AACAAAATGC CGAAACGAGT ACCGCGATAC TTCGGCACTT TGCCAAATCG AGTGTCTTTG GACGCTTGGC CTCGTACGAA GGAGCTTTGA CGGTCCAACG GGACGTGGAA GACGGCGAAA AGCTAGAGAT AGGTATTGAA TTTGCCAAGA AAAAAGGGGT CATCGATCCG GACTTTACAC CCGAACCCTA TATAACCATT GACGTTTTGG GCAAAGCACC CGCGGAGGTC GCTTCCATCA TTCTCCAGCA CGTTGGACAA CAAGCGTCGG GCGTGATTGT ATTGGTCGGC CTCTCTGGAA CGGGAAAAGG CACCACCGTC GCGCTCTTGC GTCAAACACT AGAACAGGAC CAGGGCAAAC AGGTCGTCAC CTGGTCCAAC GGCAACGTAT TTCGTTCCGT CACACTCTTG GCGGCGACCT GGTGCGAGCA ACAACCCGGT ATTGACGGAT TCGATGCCAC AAAGGCTCTG ACCAAAGGAA ACATTGCCAA TTACATGAAA ATGCTGACCT TTGGTAAATT CAACGGAAAG TACGATATCC GCATTCACGG TTTGGGTCTC GATGTGCTCG TATCGGAAGT GCAAAACACG ACGCTCAAAA GTTTGGCCGT CTCCAAGAAC ATTCCCACCG TTGCTCAATT CACACAAGGG GAAGTTATTT TGTTCGCCGC CCAAGCTGTG GAAACAATGG GTAAGGACGG GATCTTTGTG CTTCTGGAAG GTCGCGAACA AACGGTTGAT TACGTACGCA GTCCGCACCG TTTCAACCTT ACTCTATCCG ATCCAACCTT AATTGGCAAG CGACGAGCCG CGCAGCGGCT CATGGGATCG GCCGTGGGAT CCGTGCCTAA AAATGCAGCC CCAGTCATCA TTCAACAAGC CATGGAAGAT GCCCTCCACG ATATGGTGAA GGAAATTGAA TCGCAGTAA
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Protein sequence | MDLFLFTVSA AAYRYHIGWN KTKFFRGISY ATLSKQNAET STAILRHFAK SSVFGRLASY EGALTVQRDV EDGEKLEIGI EFAKKKGVID PDFTPEPYIT IDVLGKAPAE VASIILQHVG QQASGVIVLV GLSGTGKGTT VALLRQTLEQ DQGKQVVTWS NGNVFRSVTL LAATWCEQQP GIDGFDATKA LTKGNIANYM KMLTFGKFNG KYDIRIHGLG LDVLVSEVQN TTLKSLAVSK NIPTVAQFTQ GEVILFAAQA VETMGKDGIF VLLEGREQTV DYVRSPHRFN LTLSDPTLIG KRRAAQRLMG SAVGSVPKNA APVIIQQAME DALHDMVKEI ESQ
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